Browse Element(s) Details


OsAffx.2664.1.S1_at

Description tigr:9630.m01714
TID=OsAffx.2664.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1819011/11hypothetical protein
LOC_Os02g293901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18140OsAffx.12096.1.S1_at10/112+10535633..10539697NB-ARC domain containing protein, expressed
LOC_Os02g18140Os.7328.1.S1_at1/112+10535633..10539697NB-ARC domain containing protein, expressed
LOC_Os02g18150Os.52982.1.S1_at11/112+10540686..10543153expressed protein
LOC_Os02g18160OsAffx.2662.1.S1_at11/112+10545839..10546509hypothetical protein
LOC_Os02g18160OsAffx.31859.1.S1_at1/112+10545839..10546509hypothetical protein
LOC_Os02g18170OsAffx.2663.1.S1_at11/112+10548893..10550861hypothetical protein
LOC_Os02g18180Os.49251.1.S1_at11/112+10552436..10558879ATP-binding cassette sub-family E member 1, putative, expressed
LOC_Os02g18190OsAffx.2664.1.S1_at11/112+10564185..10564572hypothetical protein
LOC_Os02g18200NANA2+10569001..10571742retrotransposon protein, putative, unclassified
LOC_Os02g18210OsAffx.22722.1.S1_x_at2/112+10573155..10576864retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18210OsAffx.22722.1.S1_at2/112+10573155..10576864retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18220NANA2+10579620..10579871hypothetical protein
LOC_Os02g18230OsAffx.25367.1.S1_at1/112+10581544..10585823retrotransposon, putative, centromere-specific
LOC_Os02g18240Os.24831.3.S1_s_at11/112+10586839..10589951retrotransposon protein, putative, unclassified
LOC_Os02g18240Os.24831.1.S1_x_at7/112+10586839..10589951retrotransposon protein, putative, unclassified
LOC_Os02g18240Os.24831.3.S1_x_at5/112+10586839..10589951retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2664.1.S1_at--646--1611Chr02:10564413..10564437 (25 bp)
AGCGGTCTCCCAGCGTCCGGATTAG
LOC_Os02g18190
OsAffx.2664.1.S1_at--429--7251Chr02:10564350..10564423 (25 bp)
GTCCGGATTAGGCAGATTTTCACGT
LOC_Os02g18190
OsAffx.2664.1.S1_at--1154--6533Chr06:22430676..22430699 (24 bp)
GATTTTCACGTGCAGGTGCATCACC
NONE
OsAffx.2664.1.S1_at--251--9055Chr11:6625916..6625936 (21 bp)
TGCATCACCCGCACGAAAAAATCGT
NONE
OsAffx.2664.1.S1_at--304--3052Chr02:10564301..10564325 (25 bp)
AATCGTGATTTTCGCAGACACTTCG
LOC_Os02g18190
OsAffx.2664.1.S1_at--653--171Chr02:10564294..10564318 (25 bp)
ATTTTCGCAGACACTTCGTTCTAGA
LOC_Os02g18190
OsAffx.2664.1.S1_at--1053--5611Chr02:10564285..10564309 (25 bp)
GACACTTCGTTCTAGAAGGGCGTAA
LOC_Os02g18190
OsAffx.2664.1.S1_at--944--5271Chr02:10564271..10564295 (25 bp)
GAAGGGCGTAACAACCACACGCAAA
LOC_Os02g18190
OsAffx.2664.1.S1_at--827--5131Chr02:10564251..10564275 (25 bp)
GCAAAAACCGATTCGACCACACGGA
LOC_Os02g18190
OsAffx.2664.1.S1_at--895--4051Chr02:10564238..10564262 (25 bp)
CGACCACACGGAAAAATAGCTATTG
LOC_Os02g18190
OsAffx.2664.1.S1_at--513--31Chr02:10564217..10564241 (25 bp)
ATTGTACTAGTGATCCTTTGGCAGA
LOC_Os02g18190
Target Sequence 
AGCGGTCTCCCAGCGTCCGGATTAGGCAGATTTTCACGTGCAGGTGCATCACCCGCACGAAAAAATCGTGATTTTCGCAG
ACACTTCGTTCTAGAAGGGCGTAACAACCACACGCAAAAACCGATTCGACCACACGGAAAAATAGCTATTGTACTAGTGA
TCCTTTGGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2664.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis