Browse Element(s) Details


OsAffx.26695.1.S1_at

Description tigr:9633.m00177
TID=OsAffx.26695.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0259011/11Transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02530Os.12706.1.S1_at11/115+854974..858517dehydroascorbate reductase, putative, expressed
LOC_Os05g02540Os.56308.1.S1_at3/115+861727..862626hypothetical protein
LOC_Os05g02550NANA5+863060..864028F-box domain containing protein
LOC_Os05g02560NANA5+867628..869531expressed protein
LOC_Os05g02570Os.56308.1.S1_at11/115+873017..874596F-box protein interaction domain containing protein, expressed
LOC_Os05g02580Os.8378.1.S1_at11/115+876879..881081expressed protein
LOC_Os05g02590OsAffx.26695.1.S1_at11/115+881497..882717Transferase family protein
LOC_Os05g02590OsAffx.18024.1.S1_x_at1/115+881497..882717Transferase family protein
LOC_Os05g02600OsAffx.14506.1.S1_at11/115+883935..884750hypothetical protein
LOC_Os05g02610OsAffx.14507.1.S1_at11/115+887693..888551hypothetical protein
LOC_Os05g02620OsAffx.26696.1.S1_at11/115+891039..891389hypothetical protein
LOC_Os05g02630OsAffx.26697.1.S1_x_at11/115+897617..898524hypothetical protein
LOC_Os05g02630OsAffx.26697.1.S1_at10/115+897617..898524hypothetical protein
LOC_Os05g02640Os.53547.1.S1_at11/115+900062..904115hydrolase, NUDIX family protein, expressed
LOC_Os05g02650Os.31700.2.S1_s_at11/115+904477..912072expressed protein
LOC_Os05g02650OsAffx.14508.1.S1_at11/115+904477..912072expressed protein
LOC_Os05g02650Os.39957.1.A1_at9/115+904477..912072expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26695.1.S1_at--739--5611Chr05:882039..882143 (25 bp)
GACAAGATCAAGCACGTTCGAGAGC
LOC_Os05g02590
OsAffx.26695.1.S1_at--354--1891Chr05:882026..882050 (25 bp)
ACGTTCGAGAGCGTGGTCGGCCACC
LOC_Os05g02590
OsAffx.26695.1.S1_at--659--9371Chr05:882022..882046 (25 bp)
TCGAGAGCGTGGTCGGCCACCTCTG
LOC_Os05g02590
OsAffx.26695.1.S1_at--202--6111Chr05:881718..881742 (25 bp)
GAGTCGCAGGCGGTGCTGTGCCCGG
LOC_Os05g02590
OsAffx.26695.1.S1_at--429--7551Chr05:881622..881646 (25 bp)
GGGCCGTTCTACTTCACGCCGTCGT
LOC_Os05g02590
OsAffx.26695.1.S1_at--177--10531Chr05:881610..881634 (25 bp)
TTCACGCCGTCGTACTTGCCGATGG
LOC_Os05g02590
OsAffx.26695.1.S1_at--1038--9871Chr05:881598..881622 (25 bp)
TACTTGCCGATGGAGGGCACCGTGT
LOC_Os05g02590
OsAffx.26695.1.S1_at--37--1931Chr05:881549..881573 (25 bp)
ACGGTGGCATCGATGCCTACGTGGC
LOC_Os05g02590
OsAffx.26695.1.S1_at--350--9191Chr05:881536..881560 (25 bp)
TGCCTACGTGGCCTTGTTCGAGACT
LOC_Os05g02590
OsAffx.26695.1.S1_at--303--9931Chr05:881532..881556 (25 bp)
TACGTGGCCTTGTTCGAGACTCACC
LOC_Os05g02590
OsAffx.26695.1.S1_at--478--8451Chr05:881528..881552 (25 bp)
TGGCCTTGTTCGAGACTCACCTCGA
LOC_Os05g02590
Target Sequence 
GACAAGATCAAGCACGTTCGAGAGCGTGGTCGGCCACCTCTGGCGCGCGGCCTCGCCGCCGGCGAGGCCACGACGCTCCG
CGTCTCCGTGAACGGCCGGACGCGCATGCGGCCGGCCGTCCCGCGCGGCTACTTCGGCAACCTCGTCCTCTGGGCGTTCC
CGCGGTGCGCCGCCGGCGAGCTGGCGTCCCGCCCCGTGCAGCACGCCGCCAAGCTGATCCGCCGCGCCGTGGCGCGCGCC
GACGACGCCTACTTCCGCTCGTTCGTCGACTTCGCGTCGTCCGGCGCCGTCGAGGCCGAGGGGCTCGCCGCCACCGCCGA
CGAGTCGCAGGCGGTGCTGTGCCCGGACGTCGAGGTGGACAGCTGGCTGGGCATCGACTTCTACGAGCTCGACTTCGGCG
GCGGCGGCGGCGGCGGCGGGCCGTTCTACTTCACGCCGTCGTACTTGCCGATGGAGGGCACCGTGTTCCTCGTGCCGTCC
TTCGCCGGCGACGGTGGCATCGATGCCTACGTGGCCTTGTTCGAGACTCACCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis