Browse Element(s) Details


OsAffx.26746.1.S1_x_at

Description tigr:9633.m00492
TID=OsAffx.26746.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AF375405 AT4g26860F10M23_200
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g057407/11Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05700Os.7113.1.S1_at11/115+2812160..2818866Cullin-1, putative, expressed
LOC_Os05g05710Os.22843.1.S1_at11/115+2823712..2829677EF hand family protein, expressed
LOC_Os05g05720Os.49925.2.S1_x_at11/115+2830871..2837288TPR Domain containing protein, expressed
LOC_Os05g05720Os.49925.2.S2_at11/115+2830871..2837288TPR Domain containing protein, expressed
LOC_Os05g05730NANA5+2837436..2837780Glutaredoxin-like family protein
LOC_Os05g05740Os.48588.1.A1_at11/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05740OsAffx.26746.1.S1_x_at7/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05740OsAffx.26746.1.S1_at6/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05750OsAffx.26747.1.S1_at6/115+2845380..2845922hypothetical protein
LOC_Os05g05760Os.53247.1.S1_at11/115+2847042..2848340expressed protein
LOC_Os05g05770OsAffx.14558.1.S1_at8/115+2850753..2851717hypothetical protein
LOC_Os05g05780Os.2916.1.S1_at11/115+2852343..2862799Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os05g05780Os.22820.1.A1_at1/115+2852343..2862799Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os05g05790Os.20667.1.S1_at10/115+2862898..2867493Double-stranded RNA binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030170molecular_functionpyridoxal phosphate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26746.1.S1_x_at--534--1391Chr05:2843550..2843574 (25 bp)
AGACGAAGCCGGTGGGCGTCATCCG
LOC_Os05g05740
OsAffx.26746.1.S1_x_at--704--7631Chr05:2843493..2843517 (25 bp)
GGGAGAACTACGTCCAGGAGCTCAT
LOC_Os05g05740
OsAffx.26746.1.S1_x_at--93--2951NONE
AAGGCCTCCCAGCTTCCAGAGGATA
NONE
OsAffx.26746.1.S1_x_at--877--10751Chr05:2842511..2842535 (25 bp)
TTGAGTGGCATTTCATCGGGAACCT
LOC_Os05g05740
OsAffx.26746.1.S1_x_at--617--4951NONE
GCATTTCATCGGGAACCTCCAAAGC
NONE
OsAffx.26746.1.S1_x_at--139--7611NONE
GGGAACCTCCAAAGCAACAAGGCCA
NONE
OsAffx.26746.1.S1_x_at--273--1491Chr05:2842482..2842506 (25 bp)
AGCAACAAGGCCAGAGCCCTCCTAG
LOC_Os05g05740
OsAffx.26746.1.S1_x_at--481--4271Chr05:2842064..2842489 (25 bp)
CCTCCTAGCTGGTGTACCAAATCTT
LOC_Os05g05740
OsAffx.26746.1.S1_x_at--767--1611Chr05:2842058..2842082 (25 bp)
AGCTGGTGTACCAAATCTTGACATG
LOC_Os05g05740
OsAffx.26746.1.S1_x_at--696--431Chr05:2842044..2842068 (25 bp)
ATCTTGACATGGTCGAGAGTGTTGA
LOC_Os05g05740
OsAffx.26746.1.S1_x_at--289--2851NONE
AAGTCTTAGTCCAGGCACTGGCTAA
NONE
Target Sequence 
AGACGAAGCCGGTGGGCGTCATCCGCGGCGTGTACGACGCCGGCCACCGCTGCTTCGGGGAGAACTACGTCCAGGAGCTC
ATCGACAAGGCCTCCCAGCTTCCAGAGGATATTGAGTGGCATTTCATCGGGAACCTCCAAAGCAACAAGGCCAGAGCCCT
CCTAGCTGGTGTACCAAATCTTGACATGGTCGAGAGTGTTGATGATCAGAAGATTGCCAATCGCCTTGATCGTGTGGTAG
CTGACTTGGGAAGAAAACCCCTTAAAGTCTTAGTCCAGGCACTGGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26746.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis