Browse Element(s) Details


OsAffx.26748.1.S1_at

Description tigr:9633.m00500
TID=OsAffx.26748.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Heavy-metal-associated domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0582011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05800Os.9021.2.S1_at11/115+2870514..2877110TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os05g05800Os.10149.1.S1_x_at1/115+2870514..2877110TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os05g05810Os.51670.1.S1_a_at11/115+2884246..2891794ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os05g05820OsAffx.26748.1.S1_at11/115+2894019..2896161heavy metal-associated domain containing protein, expressed
LOC_Os05g05830OsAffx.26749.1.S1_x_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830OsAffx.26749.1.S1_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830Os.2919.1.S1_s_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830Os.32467.1.S1_at8/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05840Os.3394.1.S1_at11/115+2906153..2909924Histidyl-tRNA synthetase, putative, expressed
LOC_Os05g05850OsAffx.14559.1.S1_at9/115+2910698..2911277hypothetical protein
LOC_Os05g05860OsAffx.18625.1.S1_at10/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.3.S1_x_at4/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.2.S1_x_at1/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.4.S1_x_at1/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative

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Gene Ontology Classification
GO idTypeName
GO:0030001biological_processmetal ion transport
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26748.1.S1_at--492--4411Chr05:2895628..2895652 (25 bp)
GCCATGACGCCGCACGGTAAGCAGC
LOC_Os05g05820
OsAffx.26748.1.S1_at--222--1831Chr05:2895634..2895658 (25 bp)
ACGCCGCACGGTAAGCAGCCCGTTG
LOC_Os05g05820
OsAffx.26748.1.S1_at--343--6671Chr05:2895655..2895679 (25 bp)
GTTGCACCTCCCGGCAATGGCAATG
LOC_Os05g05820
OsAffx.26748.1.S1_at--910--7331Chr05:2895812..2895836 (25 bp)
GTGCAGTAGTGGAGGCAAGCCCGCA
LOC_Os05g05820
OsAffx.26748.1.S1_at--884--2651Chr05:2895828..2895852 (25 bp)
AAGCCCGCAGGACGCGCCGACGAAA
LOC_Os05g05820
OsAffx.26748.1.S1_at--485--4611Chr05:2895913..2895937 (25 bp)
GCGACGCCGATGAGCTACCCGGCGT
LOC_Os05g05820
OsAffx.26748.1.S1_at--164--2111Chr05:2895965..2895989 (25 bp)
ACATGCCGCCGTACGTCATGAGCTA
LOC_Os05g05820
OsAffx.26748.1.S1_at--822--1891Chr05:2895977..2896001 (25 bp)
ACGTCATGAGCTACAGCACGGCGCA
LOC_Os05g05820
OsAffx.26748.1.S1_at--652--8071Chr05:2896010..2896034 (25 bp)
GGAGCAGCGCCTACTACTACCCGAT
LOC_Os05g05820
OsAffx.26748.1.S1_at--627--4651Chr05:2896105..2896129 (25 bp)
GCGTCGTCGTACTACATGTTCAGCG
LOC_Os05g05820
OsAffx.26748.1.S1_at--130--7211Chr05:2896107..2896131 (25 bp)
GTCGTCGTACTACATGTTCAGCGAG
LOC_Os05g05820
Target Sequence 
GCCATGACGCCGCACGGTAAGCAGCCCGTTGCACCTCCCGGCAATGGCAATGGCGGTGGAGGAGGAGGCGGCGGCGGTGG
CAAGAAGAAAGGAAAGAAAGGCGGTGGCGGTGGCGGTGGCGGCAATGGCAACGGCAACGGCAATGCCGCCGCCGCCGCCG
CCAATGCCACCGGAGACGGCGCCGGTGCAGTAGTGGAGGCAAGCCCGCAGGACGCGCCGACGAAACCGTCCCCCGGCAAC
GCGGGTCCTCTCGCCGTCGTCGACGGCGGCGTCTTCTACCCGCCGGCGACGCCGATGAGCTACCCGGCGTCCTACTACGG
CGGCGGCGGTGGCGGGCACATGCCGCCGTACGTCATGAGCTACAGCACGGCGCACCCGCTCCGGAGCAGCGCCTACTACT
ACCCGATGGCCGGCGGTTTCGGCGGCGGCGGCGGCGGTGGCGGCTACCTCTACTCGACGGCGGCGACGGCGCCGCCGCCG
GCGTCGTCGTACTACATGTTCAGCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26748.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis