Browse Element(s) Details


OsAffx.26768.1.S1_at

Description tigr:9633.m00649
TID=OsAffx.26768.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0723011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07200OsAffx.4268.1.S1_at10/115+3776254..3780393hypothetical protein
LOC_Os05g07200OsAffx.9524.1.S1_at3/115+3776254..3780393hypothetical protein
LOC_Os05g07200Os.37083.1.S1_at1/115+3776254..3780393hypothetical protein
LOC_Os05g07210Os.50277.1.S1_at11/115+3785993..3788799ZIP zinc/iron transport family protein, expressed
LOC_Os05g07220Os.53432.1.S1_at10/115+3791325..3797787Kelch motif family protein, expressed
LOC_Os05g07230OsAffx.26768.1.S1_at11/115+3802870..3803738hypothetical protein
LOC_Os05g07240OsAffx.14578.1.S1_x_at11/115+3811047..3811559expressed protein
LOC_Os05g07240Os.8693.1.S1_x_at1/115+3811047..3811559expressed protein
LOC_Os05g07250OsAffx.27250.3.S1_x_at11/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.4.S1_s_at11/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.1.S1_x_at5/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.1.S1_at3/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.22147.1.S1_x_at2/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.4.S1_x_at1/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07260Os.24661.1.S1_at11/115+3817701..3821188phosphatidylinositolglycan, putative, expressed
LOC_Os05g07270OsAffx.14579.1.S1_at10/115+3821793..3823499LOB domain protein 13, putative
LOC_Os05g07270OsAffx.28759.1.S1_x_at1/115+3821793..3823499LOB domain protein 13, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26768.1.S1_at--228--2611Chr05:3802900..3802924 (25 bp)
AACCCGTCGCCGATGTCAGCGTCTA
LOC_Os05g07230
OsAffx.26768.1.S1_at--970--1451Chr05:3802994..3803018 (25 bp)
AGCAACAACCCCTTGCTGGGATGAA
LOC_Os05g07230
OsAffx.26768.1.S1_at--975--10711Chr05:3803006..3803030 (25 bp)
TTGCTGGGATGAAGAACTCCTTCGT
LOC_Os05g07230
OsAffx.26768.1.S1_at--522--5371Chr05:3803016..3803040 (25 bp)
GAAGAACTCCTTCGTAGGCACAGAG
LOC_Os05g07230
OsAffx.26768.1.S1_at--213--3651Chr05:3803025..3803049 (25 bp)
CTTCGTAGGCACAGAGGACGACGAC
LOC_Os05g07230
OsAffx.26768.1.S1_at--78--1071Chr05:3803061..3803085 (25 bp)
AGGGATGAAGTACCGCTGGATCTAT
LOC_Os05g07230
OsAffx.26768.1.S1_at--1061--4711Chr05:3803075..3803099 (25 bp)
GCTGGATCTATGACGGTCACCGTGT
LOC_Os05g07230
OsAffx.26768.1.S1_at--113--7111Chr05:3803090..3803114 (25 bp)
GTCACCGTGTCCACCAGGAGGAGAC
LOC_Os05g07230
OsAffx.26768.1.S1_at--190--4351Chr05:3803100..3803124 (25 bp)
CCACCAGGAGGAGACGAGATGGCCT
LOC_Os05g07230
OsAffx.26768.1.S1_at--481--4671Chr05:3803127..3803151 (25 bp)
GCGGTGGCCGACAGCAACAGCCCGA
LOC_Os05g07230
OsAffx.26768.1.S1_at--393--4511Chr05:3803133..3803157 (25 bp)
GCCGACAGCAACAGCCCGAAGCAGA
LOC_Os05g07230
Target Sequence 
AACCCGTCGCCGATGTCAGCGTCTACTTCCCCCACCCGCTGCCCGTGTCCATGGCTATCGCCTCGTCCGACGCGCACCAG
GTGGCGGCGGCAACAGCAACAACCCCTTGCTGGGATGAAGAACTCCTTCGTAGGCACAGAGGACGACGACGAGGTGGGCC
CAGGGATGAAGTACCGCTGGATCTATGACGGTCACCGTGTCCACCAGGAGGAGACGAGATGGCCTCAGCGGTGGCCGACA
GCAACAGCCCGAAGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26768.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis