Browse Element(s) Details


OsAffx.26781.1.S1_at

Description tigr:9633.m00717
TID=OsAffx.26781.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0800011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07940Os.19587.1.S1_at11/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07940Os.10620.1.S1_at11/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07940Os.19587.1.S2_at10/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07950OsAffx.26781.2.S1_at10/115+4287115..4288441F-box domain containing protein, expressed
LOC_Os05g07960Os.26779.1.S1_at11/115+4290554..4292377F-box protein interaction domain containing protein, expressed
LOC_Os05g07960OsAffx.26779.1.S1_x_at1/115+4290554..4292377F-box protein interaction domain containing protein, expressed
LOC_Os05g07970Os.14919.1.S1_at1/115+4293296..4294795hypothetical protein
LOC_Os05g07980OsAffx.26779.1.S1_x_at9/115+4296238..4299886expressed protein
LOC_Os05g07980OsAffx.26779.1.S1_at7/115+4296238..4299886expressed protein
LOC_Os05g07980Os.51733.1.S1_x_at7/115+4296238..4299886expressed protein
LOC_Os05g07980Os.50315.2.A1_at1/115+4296238..4299886expressed protein
LOC_Os05g07990OsAffx.26780.1.S1_at9/115+4300724..4301864hypothetical protein
LOC_Os05g08000OsAffx.26781.1.S1_at11/115+4303863..4305161hypothetical protein
LOC_Os05g08010Os.7402.1.S1_at11/115+4307738..4309362F-box domain containing protein, expressed
LOC_Os05g08020NANA5+4314883..4316263retrotransposon protein, putative, unclassified
LOC_Os05g08030NANA5+4323743..4324908transposon protein, putative, unclassified
LOC_Os05g08040OsAffx.31777.1.S1_at2/115+4326399..4328886retrotransposon protein, putative, unclassified
LOC_Os05g08040OsAffx.25156.1.S1_x_at2/115+4326399..4328886retrotransposon protein, putative, unclassified
LOC_Os05g08040OsAffx.31777.3.S1_at1/115+4326399..4328886retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26781.1.S1_at--113--3831Chr05:4304841..4304865 (25 bp)
CTGCCTCGCTTTGAGAGCATCAGGA
LOC_Os05g08000
OsAffx.26781.1.S1_at--1077--8971Chr05:4304745..4304769 (25 bp)
TGCAATCCCGCCACGGAGGAATTGG
LOC_Os05g08000
OsAffx.26781.1.S1_at--882--5191Chr05:4304727..4304751 (25 bp)
GAATTGGTCGCCTTGCCGGAGTCCA
LOC_Os05g08000
OsAffx.26781.1.S1_at--633--1311Chr05:4304672..4304696 (25 bp)
AGATGTGCGCCCGTTTGGGATTTGA
LOC_Os05g08000
OsAffx.26781.1.S1_at--963--4331Chr05:4304626..4304650 (25 bp)
CCATGTCTTTCAGTTTGTGACGGAT
LOC_Os05g08000
OsAffx.26781.1.S1_at--95--10231Chr05:4304583..4304607 (25 bp)
TTAAGGTCTACTCTTCGGAAGTCGG
LOC_Os05g08000
OsAffx.26781.1.S1_at--1014--2031Chr05:4304072..4304096 (25 bp)
ACTATTGAACTGCTGTCTGGGAAGA
LOC_Os05g08000
OsAffx.26781.1.S1_at--476--6871Chr05:4304037..4304061 (25 bp)
GTACCAAACCATGTTCTACCGTGGG
LOC_Os05g08000
OsAffx.26781.1.S1_at--1125--6731Chr05:4304006..4304030 (25 bp)
GTTCATCTAGACTGCAACTTAGTTT
LOC_Os05g08000
OsAffx.26781.1.S1_at--5--8191Chr05:4303935..4303959 (25 bp)
GGAACCACGTGTTATTCAAGATCTT
LOC_Os05g08000
OsAffx.26781.1.S1_at--980--6911Chr05:4303900..4303924 (25 bp)
GTATGATGGAGTATCTTCCCTATGT
LOC_Os05g08000
Target Sequence 
CTGCCTCGCTTTGAGAGCATCAGGATGGTGGACAGCTGCGGCGGCCTCCTCCTCTGCCGCTGCTTCGAGAGCTCCGATGC
GTCCCGCTACGTCGTCTGCAATCCCGCCACGGAGGAATTGGTCGCCTTGCCGGAGTCCAGCTATGACGCCGAGGGCGGCG
GCGAGGAGGAGATGTGCGCCCGTTTGGGATTTGACCCTGATGTCTCCTCCCAATTCCATGTCTTTCAGTTTGTGACGGAT
GCGAGGCTGTGGTTGGTGTTAAGGTCTACTCTTCGGAAGTCGGAGAATGGAATTACAGTTCTTGAGGACTATTCTAAGGA
TGAATGGACACTGAAGCATAAGGTGACTATTGAACTGCTGTCTGGGAAGATAAGTTGCAAGTACCAAACCATGTTCTACC
GTGGGGTTGCAGTTCATCTAGACTGCAACTTAGTTTACTACATTGCTGATTACATACTGATGTCGTATGACATGGATCGT
AAGGAACCACGTGTTATTCAAGATCTTGGGTCAGATTGTATGATGGAGTATCTTCCCTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26781.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis