Browse Element(s) Details


OsAffx.26829.1.S1_at

Description tigr:9633.m00993
TID=OsAffx.26829.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1130011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11260Os.38301.2.A1_at11/115+6337424..6341719expressed protein
LOC_Os05g11260OsAffx.14635.1.S1_x_at11/115+6337424..6341719expressed protein
LOC_Os05g11260Os.38301.1.S1_s_at11/115+6337424..6341719expressed protein
LOC_Os05g11260Os.38301.1.S1_a_at11/115+6337424..6341719expressed protein
LOC_Os05g11260Os.27133.2.S1_at5/115+6337424..6341719expressed protein
LOC_Os05g11270OsAffx.20490.1.S1_at1/115+6345492..6346607transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11280NANA5+6347217..6348704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11290OsAffx.30226.2.S1_x_at2/115+6351178..6352532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11290OsAffx.442.1.S1_x_at1/115+6351178..6352532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11290OsAffx.30226.2.S1_s_at1/115+6351178..6352532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11300OsAffx.26829.1.S1_at11/115+6359459..6360295hypothetical protein
LOC_Os05g11310OsAffx.26830.1.S1_at11/115+6362694..6364845hypothetical protein
LOC_Os05g11320OsAffx.9949.1.S1_at1/115+6373200..6375405Metallothionein-like protein type 3, putative, expressed
LOC_Os05g11320Os.2256.1.S1_at1/115+6373200..6375405Metallothionein-like protein type 3, putative, expressed
LOC_Os05g11320Os.7992.3.S1_x_at1/115+6373200..6375405Metallothionein-like protein type 3, putative, expressed
LOC_Os05g11330Os.55257.1.S1_at11/115+6385067..6385803Rapid ALkalinization Factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26829.1.S1_at--455--5432Chr07:19255346..19255715 (25 bp)
GAACCAACAAATTGCTTCCTGCTGC
NONE
OsAffx.26829.1.S1_at--645--4771Chr05:6359509..6359770 (25 bp)
GCTGCTGTCCAAGAACAAGGATCAA
LOC_Os05g11300
OsAffx.26829.1.S1_at--393--2911Chr05:6359762..6359786 (25 bp)
AAGGATCAAACTGAGCTGCGGCGAT
LOC_Os05g11300
OsAffx.26829.1.S1_at--150--1611Chr05:6359775..6359799 (25 bp)
AGCTGCGGCGATCGTACTCGGAATA
LOC_Os05g11300
OsAffx.26829.1.S1_at--1--7011Chr05:6359788..6359812 (25 bp)
GTACTCGGAATACTCGAACACCACC
LOC_Os05g11300
OsAffx.26829.1.S1_at--181--5491Chr05:6359803..6359827 (25 bp)
GAACACCACCAGAGCGGCGGATCAT
LOC_Os05g11300
OsAffx.26829.1.S1_at--438--1171Chr05:6359845..6359869 (25 bp)
AGTAGTGGCAGTGGCTTCCTCCGGC
LOC_Os05g11300
OsAffx.26829.1.S1_at--928--2111Chr05:6360090..6360114 (25 bp)
ACATGGAGGTGTGCAGGGACTTCAA
LOC_Os05g11300
OsAffx.26829.1.S1_at--827--911Chr05:6360125..6360149 (25 bp)
AGGCTGAACCCGAAGCTGTCCCTCG
LOC_Os05g11300
OsAffx.26829.1.S1_at--1045--4471Chr05:6360149..6360173 (25 bp)
GCCGGCTCCATGAGGGACATCGCCA
LOC_Os05g11300
OsAffx.26829.1.S1_at--128--4351Chr05:6360171..6360195 (25 bp)
CCAGGAGGAGCTTCAACCGGCGGAC
LOC_Os05g11300
Target Sequence 
GAACCAACAAATTGCTTCCTGCTGCTGTCCAAGAACAAGGATCAAACTGAGCTGCGGCGATCGTACTCGGAATACTCGAA
CACCACCAGAGCGGCGGATCATCTCGTCGCCGGCGCCGGAGTAGTGGCAGTGGCTTCCTCCGGCGGTGCCTCCGGCGGCG
GCGGCGGCGGCAGCGGCTCGGACGTGGAGACGACGGTGCGGTGCGCGTGCTGCAGCGTGACGGAGGAGTGCACGGCGGCC
TACATCCGCCACATCCGGGCGGCGCACTACGGAGACTGGGTGTGCGGCCTCTGCGCGGAGGCCGTGCGCGAGCGGATGCG
CGGCGGCGGCGGCGGCGGCGGCGTGGAGGCGGCGCTGCGGTGGCACATGGAGGTGTGCAGGGACTTCAACTCGACGACGA
GGCTGAACCCGAAGCTGTCCCTCGCCGGCTCCATGAGGGACATCGCCAGGAGGAGCTTCAACCGGCGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis