Browse Element(s) Details


OsAffx.26840.1.S1_s_at

Description tigr:9633.m01030
TID=OsAffx.26840.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1165011/11expressed protein
LOC_Os11g144901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11620OsAffx.14641.1.S1_at11/115+6561447..6561913expressed protein
LOC_Os05g11630OsAffx.26839.1.S1_at10/115+6570883..6573212hypothetical protein
LOC_Os05g11640OsAffx.14642.1.S1_at10/115+6583267..6584304hypothetical protein
LOC_Os05g11650OsAffx.26840.1.S1_s_at11/115+6585337..6587059expressed protein
LOC_Os05g11650OsAffx.26840.1.S1_at11/115+6585337..6587059expressed protein
LOC_Os05g11660NANA5+6594337..6594845hypothetical protein
LOC_Os05g11670NANA5+6600232..6602141transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11680NANA5+6603986..6606054retrotransposon, putative, centromere-specific
LOC_Os05g11690Os.45902.1.A1_x_at4/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690Os.45976.1.S1_at3/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690Os.45976.1.S1_x_at2/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690OsAffx.727.1.S1_x_at1/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690Os.10263.1.S1_at1/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690OsAffx.22442.1.S1_x_at1/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26840.1.S1_s_at--695--8111Chr05:6585553..6585577 (25 bp)
GGACGGTGATGCAATGCCGCGTATA
LOC_Os05g11650
OsAffx.26840.1.S1_s_at--1064--3971Chr05:6585550..6585574 (25 bp)
CGGTGATGCAATGCCGCGTATACCT
LOC_Os05g11650
OsAffx.26840.1.S1_s_at--465--5171Chr05:6585543..6585567 (25 bp)
GCAATGCCGCGTATACCTCTCACGG
LOC_Os05g11650
OsAffx.26840.1.S1_s_at--273--7611Chr05:6585455..6585479 (25 bp)
GGGACGTAGTCCATGCCGGTATATC
LOC_Os05g11650
OsAffx.26840.1.S1_s_at--395--10071Chr05:6585449..6585473 (25 bp)
TAGTCCATGCCGGTATATCTGTCAC
LOC_Os05g11650
OsAffx.26840.1.S1_s_at--65--3511Chr05:6585444..6585468 (25 bp)
CATGCCGGTATATCTGTCACGTATA
LOC_Os05g11650
OsAffx.26840.1.S1_s_at--22--7111Chr05:6585429..6585453 (25 bp)
GTCACGTATATGTACGATGTATCTA
LOC_Os05g11650
OsAffx.26840.1.S1_s_at--817--6992Chr11:4322780..4322804 (25 bp)
GTACGATGTATCTATCTATGTATTT
NONE
OsAffx.26840.1.S1_s_at--336--3692Chr11:8135185..8135209 (25 bp)
CTATGTATTTAGTGTCCAGCAAGCA
LOC_Os11g14490
OsAffx.26840.1.S1_s_at--365--1112Chr11:8134801..8135199 (25 bp)
AGTGTCCAGCAAGCAATTATGTACT
NONE
OsAffx.26840.1.S1_s_at--892--6271Chr05:6585368..6585392 (25 bp)
GATGTAGTAGTAAGCAATACTTATC
LOC_Os05g11650
Target Sequence 
GGACGGTGATGCAATGCCGCGTATACCTCTCACGGCCGGCGCGACAGCCATGACGGCGGTGGAGCTCGCCGGCGGCGGCC
GGAGGCGGTGGCTGGCTGGGGACGTAGTCCATGCCGGTATATCTGTCACGTATATGTACGATGTATCTATCTATGTATTT
AGTGTCCAGCAAGCAATTATGTACTGATGTAGTAGTAAGCAATACTTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26840.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis