Browse Element(s) Details


OsAffx.26982.2.S1_at

Description tigr:9633.m02082
TID=OsAffx.26982.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2349011/11hypothetical protein
LOC_Os02g240302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23460Os.50619.1.S1_at1/115+13336082..13339026hypothetical protein
LOC_Os05g23460Os.47824.1.S1_at1/115+13336082..13339026hypothetical protein
LOC_Os05g23460Os.50619.1.S1_x_at1/115+13336082..13339026hypothetical protein
LOC_Os05g23470Os.18025.1.S1_at11/115+13343520..13345932AN1-like Zinc finger family protein, expressed
LOC_Os05g23480OsAffx.26981.1.S1_at11/115+13351667..13352839hypothetical protein
LOC_Os05g23490OsAffx.26982.2.S1_at11/115+13363793..13365168hypothetical protein
LOC_Os05g23490OsAffx.26982.1.S1_x_at3/115+13363793..13365168hypothetical protein
LOC_Os05g23500OsAffx.29731.1.S1_at2/115+13367434..13371473retrotransposon protein, putative, unclassified
LOC_Os05g23500OsAffx.29731.2.S1_at1/115+13367434..13371473retrotransposon protein, putative, unclassified
LOC_Os05g23500OsAffx.29731.3.S1_at1/115+13367434..13371473retrotransposon protein, putative, unclassified
LOC_Os05g23510OsAffx.30850.1.S1_at1/115+13374159..13378547retrotransposon protein, putative, unclassified
LOC_Os05g23510OsAffx.1001.1.S1_at1/115+13374159..13378547retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26982.2.S1_at--1034--8631Chr05:13364362..13364386 (25 bp)
TGCGGTGGTCGAAAGGGAGGCGTCC
LOC_Os05g23490
OsAffx.26982.2.S1_at--649--6211Chr05:13364378..13364402 (25 bp)
GAGGCGTCCAGTTAGCGTTGACACG
LOC_Os05g23490
OsAffx.26982.2.S1_at--432--8351Chr05:13364380..13364404 (25 bp)
GGCGTCCAGTTAGCGTTGACACGAT
LOC_Os05g23490
OsAffx.26982.2.S1_at--380--7271Chr05:13364383..13364407 (25 bp)
GTCCAGTTAGCGTTGACACGATCCA
LOC_Os05g23490
OsAffx.26982.2.S1_at--306--3451Chr05:13364386..13364410 (25 bp)
CAGTTAGCGTTGACACGATCCAGGC
LOC_Os05g23490
OsAffx.26982.2.S1_at--1019--6771Chr05:13364388..13364412 (25 bp)
GTTAGCGTTGACACGATCCAGGCAA
LOC_Os05g23490
OsAffx.26982.2.S1_at--464--9991Chr05:13364390..13364414 (25 bp)
TAGCGTTGACACGATCCAGGCAACA
LOC_Os05g23490
OsAffx.26982.2.S1_at--310--5151Chr05:13364409..13364864 (25 bp)
GCAACAAGTGTGCAACACAGTGCTG
LOC_Os05g23490
OsAffx.26982.2.S1_at--354--2231Chr05:13364846..13364867 (22 bp)
ACAAGTGTGCAACACAGTGCTGTTT
LOC_Os05g23490
OsAffx.26982.2.S1_at--1143--6332Chr05:13365112..13365136 (25 bp)
GATCAGACCAATAAGGTATTCAACT
LOC_Os05g23490
OsAffx.26982.2.S1_at--128--9652Chr05:13365114..13365138 (25 bp)
TCAGACCAATAAGGTATTCAACTGG
LOC_Os05g23490
Target Sequence 
TGCGGTGGTCGAAAGGGAGGCGTCCAGTTAGCGTTGACACGATCCAGGCAACAAGTGTGCAACACAGTGCTGTTTGTGTA
TGCACATAACAAGAATGAAATTAAGGGGAGCAGCTCTGGTGCGACGGGGAAGTTGGCAGCACATACGCATTTCATTGAGC
ACATCTTGAGCGTTTTAGATTTCTTGAATGTTTTATATTGTGATCAGACCAATAAGGTATTCAACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26982.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis