Browse Element(s) Details


OsAffx.27071.1.S1_at

Description tigr:9633.m02656
TID=OsAffx.27071.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2898010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28940Os.7201.1.S1_at11/115+16885103..16891203Developmentally regulated GTP-binding protein 2, putative, expressed
LOC_Os05g28950OsAffx.4464.1.S1_s_at11/115+16891972..16894985CAAX amino terminal protease family protein, expressed
LOC_Os05g28950OsAffx.4464.1.S1_at7/115+16891972..16894985CAAX amino terminal protease family protein, expressed
LOC_Os05g28960Os.27783.1.S1_at11/115+16896441..16901206Acyltransferase family protein, expressed
LOC_Os05g28960Os.7897.1.S2_s_at10/115+16896441..16901206Acyltransferase family protein, expressed
LOC_Os05g28970OsAffx.4465.1.S1_at11/115+16906061..16907877hypothetical protein
LOC_Os05g28980Os.53116.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980Os.7465.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980OsAffx.27071.1.S1_at10/115+16907947..16914637expressed protein
LOC_Os05g28990OsAffx.27072.1.S1_at11/115+16914304..16916237hypothetical protein
LOC_Os05g29000OsAffx.27073.1.S1_at11/115+16917740..16918258expressed protein
LOC_Os05g29010Os.9121.1.S1_at11/115+16925514..16930747DNA primase small subunit, putative, expressed
LOC_Os05g29020Os.13973.2.S1_s_at11/115+16933659..16936781expressed protein
LOC_Os05g29020OsAffx.4466.1.S1_s_at11/115+16933659..16936781expressed protein
LOC_Os05g29030Os.13973.3.S1_at11/115+16936260..16940904protein phosphatase 2C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009785biological_processblue light signaling pathway
GO:0010161biological_processred light signaling pathway
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27071.1.S1_at--1000--6511Chr05:16911260..16911284 (25 bp)
GATATTGGCATCTTTGTGGTACTAT
LOC_Os05g28980
OsAffx.27071.1.S1_at--119--8291Chr05:16911254..16911278 (25 bp)
GGCATCTTTGTGGTACTATGTAAAT
LOC_Os05g28980
OsAffx.27071.1.S1_at--1083--3091Chr05:16911232..16911256 (25 bp)
AATATTGGGTAGCTGCCAAGCTGGA
LOC_Os05g28980
OsAffx.27071.1.S1_at--1006--9991Chr05:16911223..16911247 (25 bp)
TAGCTGCCAAGCTGGATAGTTTCTG
LOC_Os05g28980
OsAffx.27071.1.S1_at--920--6491NONE
GATAGTTTCTGGGTATGTCCCATCT
NONE
OsAffx.27071.1.S1_at--557--571Chr05:16909465..16909489 (25 bp)
ATCCTTTTTTCTTCTCTATAATGCT
LOC_Os05g28980
OsAffx.27071.1.S1_at--671--10311Chr05:16909458..16909482 (25 bp)
TTTCTTCTCTATAATGCTGGCAATG
LOC_Os05g28980
OsAffx.27071.1.S1_at--950--4711Chr05:16909443..16909467 (25 bp)
GCTGGCAATGAACATATGCAATTTT
LOC_Os05g28980
OsAffx.27071.1.S1_at--229--9871Chr05:16909419..16909443 (25 bp)
TACATTTTTACATCATATTCAGTTG
LOC_Os05g28980
OsAffx.27071.1.S1_at--600--9651Chr05:16909401..16909425 (25 bp)
TCAGTTGAAGATACATGGCATTATT
LOC_Os05g28980
OsAffx.27071.1.S1_at--754--3491Chr05:16909169..16909412 (25 bp)
CATGGCATTATTGTTTGCCTGTGGC
LOC_Os05g28980
Target Sequence 
GATATTGGCATCTTTGTGGTACTATGTAAATATTGGGTAGCTGCCAAGCTGGATAGTTTCTGGGTATGTCCCATCTGTGC
TACAAGGGTTGGAGTGGACTTGATAGGTCACTTGACAATGCAGCATGGAAGTTACTTTAAGATATCCTTTTTTCTTCTCT
ATAATGCTGGCAATGAACATATGCAATTTTACATTTTTACATCATATTCAGTTGAAGATACATGGCATTATTGTTTGCCT
GTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis