Browse Element(s) Details


OsAffx.27072.1.S1_at

Description tigr:9633.m02657
TID=OsAffx.27072.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2899011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28940Os.7201.1.S1_at11/115+16885103..16891203Developmentally regulated GTP-binding protein 2, putative, expressed
LOC_Os05g28950OsAffx.4464.1.S1_s_at11/115+16891972..16894985CAAX amino terminal protease family protein, expressed
LOC_Os05g28950OsAffx.4464.1.S1_at7/115+16891972..16894985CAAX amino terminal protease family protein, expressed
LOC_Os05g28960Os.27783.1.S1_at11/115+16896441..16901206Acyltransferase family protein, expressed
LOC_Os05g28960Os.7897.1.S2_s_at10/115+16896441..16901206Acyltransferase family protein, expressed
LOC_Os05g28970OsAffx.4465.1.S1_at11/115+16906061..16907877hypothetical protein
LOC_Os05g28980Os.53116.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980Os.7465.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980OsAffx.27071.1.S1_at10/115+16907947..16914637expressed protein
LOC_Os05g28990OsAffx.27072.1.S1_at11/115+16914304..16916237hypothetical protein
LOC_Os05g29000OsAffx.27073.1.S1_at11/115+16917740..16918258expressed protein
LOC_Os05g29010Os.9121.1.S1_at11/115+16925514..16930747DNA primase small subunit, putative, expressed
LOC_Os05g29020Os.13973.2.S1_s_at11/115+16933659..16936781expressed protein
LOC_Os05g29020OsAffx.4466.1.S1_s_at11/115+16933659..16936781expressed protein
LOC_Os05g29030Os.13973.3.S1_at11/115+16936260..16940904protein phosphatase 2C, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27072.1.S1_at--247--1271Chr05:16914340..16914364 (25 bp)
AGATTTGCCTCCCTTGGCCTCGTCA
LOC_Os05g28990
OsAffx.27072.1.S1_at--1130--3293Chr05:16914367..16914391 (25 bp)
CACAAATCCAGTGGGCATGGTGCCT
LOC_Os05g28990
OsAffx.27072.1.S1_at--477--8411Chr05:16915770..16915794 (25 bp)
GGCCAGCTTTTTAGCCAAACGGCGA
LOC_Os05g28990
OsAffx.27072.1.S1_at--1000--7331Chr05:16915878..16915902 (25 bp)
GTGAGGCCAACGGACAAAGGAAGAA
LOC_Os05g28990
OsAffx.27072.1.S1_at--1093--2111Chr05:16915891..16915915 (25 bp)
ACAAAGGAAGAAGTCCCATTCACTC
LOC_Os05g28990
OsAffx.27072.1.S1_at--629--5091Chr05:16915953..16915977 (25 bp)
GCACGAAGACAGCTGGGACACACCT
LOC_Os05g28990
OsAffx.27072.1.S1_at--468--611Chr05:16915984..16916008 (25 bp)
ATGCGCTTGCAGTTCTTGGCGACGA
LOC_Os05g28990
OsAffx.27072.1.S1_at--44--3452Chr05:16915993..16916017 (25 bp)
CAGTTCTTGGCGACGAAGCCAGCAA
LOC_Os05g28990
OsAffx.27072.1.S1_at--884--4351Chr05:16916011..16916035 (25 bp)
CCAGCAAGCGGGTGCGTGATCCAGT
LOC_Os05g28990
OsAffx.27072.1.S1_at--783--3991Chr05:16916025..16916049 (25 bp)
CGTGATCCAGTGACGCGGAAGAAGA
LOC_Os05g28990
OsAffx.27072.1.S1_at--797--4051Chr05:16916165..16916189 (25 bp)
CGATGCCTCGCTCCTGACTGAAGGG
LOC_Os05g28990
Target Sequence 
AGATTTGCCTCCCTTGGCCTCGTCACGCACAAATCCAGTGGGCATGGTGCCTTGGGCGGCGTCGATGACCAGGAGGCGCG
AGCAAAGGATGGGTTTGGGGGCCAGCTTTTTAGCCAAACGGCGACAACGGCGGTGGCAACAGAGGAGACAGTGGGCGCGG
GAGAGGATGCTAATGGCGGAGAGGCCGATGAGCTGGTGGGAGACGTGGTGAGGCCAACGGACAAAGGAAGAAGTCCCATT
CACTCCCTTCCTCCGGCGGCTGCAGGCGTTCGTGGAAGAGGAGCACGAAGACAGCTGGGACACACCTTCCCCCATGCGCT
TGCAGTTCTTGGCGACGAAGCCAGCAAGCGGGTGCGTGATCCAGTGACGCGGAAGAAGATGAGTGGAGGGCGTGGCGATG
GAGGAGGTGAGGACGGGGTTGTCGGCTCCCTTCGCTCCCTTAACCATCGTCGCTCATTGCCGCAATCCCCTCTGCCCCCA
TCGCTGCTCATCGGCGATGCCTCGCTCCTGACTGAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis