Browse Element(s) Details


OsAffx.27081.1.S1_at

Description tigr:9629.m03857
TID=OsAffx.27081.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transmembrane amino acid transporter protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4041011/11Transmembrane amino acid transporter protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40370OsAffx.23603.2.S1_at6/111+23117960..23120571SIT4 phosphatase-associated family protein, putative
LOC_Os01g40380OsAffx.23604.1.S1_at11/111+23124473..23125814hypothetical protein
LOC_Os01g40380OsAffx.11404.1.S1_s_at1/111+23124473..23125814hypothetical protein
LOC_Os01g40390OsAffx.23603.1.S1_at11/111+23130534..23135052hypothetical protein
LOC_Os01g40390OsAffx.27081.1.S1_x_at1/111+23130534..23135052hypothetical protein
LOC_Os01g40400OsAffx.11406.1.S1_at11/111+23135546..23137534Histone deacetylase family protein
LOC_Os01g40410OsAffx.27081.1.S1_x_at11/111+23141921..23144757Transmembrane amino acid transporter protein
LOC_Os01g40410OsAffx.27081.1.S1_at11/111+23141921..23144757Transmembrane amino acid transporter protein
LOC_Os01g40420Os.9530.2.S1_x_at11/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40420Os.9530.2.S1_at11/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40420Os.9530.1.S1_at10/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40420OsAffx.27080.1.S1_x_at4/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40430OsAffx.23606.1.S1_at10/111+23151657..23153964WRKY DNA binding domain containing protein, expressed
LOC_Os01g40450OsAffx.23607.1.S1_x_at11/111+23162626..23166968expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27081.1.S1_at--646--5651Chr01:23142717..23142741 (25 bp)
GACATGGCGTTTTCCCGACTGTGTA
LOC_Os01g40410
OsAffx.27081.1.S1_at--879--2111Chr01:23142718..23142742 (25 bp)
ACATGGCGTTTTCCCGACTGTGTAC
LOC_Os01g40410
OsAffx.27081.1.S1_at--639--7331Chr01:23144311..23144335 (25 bp)
GTGCAGGCGCAAGTGACACTGAGCT
LOC_Os01g40410
OsAffx.27081.1.S1_at--823--891Chr01:23144315..23144339 (25 bp)
AGGCGCAAGTGACACTGAGCTTACC
LOC_Os01g40410
OsAffx.27081.1.S1_at--682--3211Chr01:23144320..23144344 (25 bp)
CAAGTGACACTGAGCTTACCCACGG
LOC_Os01g40410
OsAffx.27081.1.S1_at--852--371Chr01:23144470..23144494 (25 bp)
ATCAACAGGCTGACTAGGGTGCTCA
LOC_Os01g40410
OsAffx.27081.1.S1_at--587--9711Chr01:23144471..23144495 (25 bp)
TCAACAGGCTGACTAGGGTGCTCAC
LOC_Os01g40410
OsAffx.27081.1.S1_at--39--4251Chr01:23144591..23144615 (25 bp)
CCGTTGCTGTGTTGTTCCCGTGCTT
LOC_Os01g40410
OsAffx.27081.1.S1_at--26--9131Chr01:23144595..23144619 (25 bp)
TGCTGTGTTGTTCCCGTGCTTGAGC
LOC_Os01g40410
OsAffx.27081.1.S1_at--343--8671Chr01:23144699..23144723 (25 bp)
TGTGTGTCGCCATTGTTGGCACCTA
LOC_Os01g40410
OsAffx.27081.1.S1_at--858--7471Chr01:23144700..23144724 (25 bp)
GTGTGTCGCCATTGTTGGCACCTAC
LOC_Os01g40410
Target Sequence 
GACATGGCGTTTTCCCGACTGTGTACTCCTCAATGAACTCTAAGAAGGATTTTCCTAAGGTTTTGCTGATCTCTTTGGTG
CTGTGCAGTCTCAACTACGCAGTGACAGCGGTGTTGGGATATCTGATCTATGGTGAGGATGTGCAGGCGCAAGTGACACT
GAGCTTACCCACGGGGAAGCTGTACACTAGGATCGCCATCCTGACGACACTAATCACCCCGCTAGCGAAGTACGCGCTCG
TGATCCAGCCAGTCACAATAGCGATAGAGGAGAAGCTGTCAGCGACGACGGACGCCGAGATCAACAGGCTGACTAGGGTG
CTCACCAGCACAGCCGTCGTTATCAGCACGGTGGTGCTGGCATGCACGGTGCCCTTCTTCGGCTACCTCATATCATTCAT
CGGGTCCTCGCTGAACGTCACCGTTGCTGTGTTGTTCCCGTGCTTGAGCTACCTCAAGATCTACATGTCCCGAGGAGGAG
TTGGCTGCTTCGAGATGGCGGCGATCATCGGGATACTGGTCATCGGAGTGTGTGTCGCCATTGTTGGCACCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis