Browse Element(s) Details


OsAffx.2709.1.S1_at

Description tigr:9630.m02084
TID=OsAffx.2709.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to RAB2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2171011/11Ras-related protein Rab-2-B, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21680OsAffx.24374.1.S1_at11/112+12885455..12886276hypothetical protein
LOC_Os02g21690OsAffx.12150.1.S1_at7/112+12887926..12888210hypothetical protein
LOC_Os02g21700OsAffx.12151.1.S1_at11/112+12893454..12895429Protein kinase domain containing protein, expressed
LOC_Os02g21710OsAffx.2709.1.S1_at11/112+12907605..12908006Ras-related protein Rab-2-B, putative
LOC_Os02g21720OsAffx.23366.2.S1_s_at1/112+12908783..12912373transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21730Os.45173.1.S1_x_at4/112+12914264..12917866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21730Os.46314.3.S1_at2/112+12914264..12917866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21730OsAffx.7362.1.S1_x_at1/112+12914264..12917866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21740OsAffx.9790.1.S1_x_at1/112+12919172..12921972retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21740OsAffx.8338.1.S1_x_at1/112+12919172..12921972retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21750Os.51901.1.S1_at11/112+12923846..12927799ABC transporter family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006888biological_processER to Golgi vesicle-mediated transport
GO:0016049biological_processcell growth
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2709.1.S1_at--771--10251Chr02:12907641..12907665 (25 bp)
TTTGATCATCTCACGACTTGGATAG
LOC_Os02g21710
OsAffx.2709.1.S1_at--1128--6131Chr02:12907690..12907714 (25 bp)
GAGGTGCCAAGCTGACAATATGTTT
LOC_Os02g21710
OsAffx.2709.1.S1_at--147--31Chr02:12907716..12907740 (25 bp)
ATTGGAAACAAATGCGACCTCTCTG
LOC_Os02g21710
OsAffx.2709.1.S1_at--753--5831Chr02:12907731..12907755 (25 bp)
GACCTCTCTGATAGACGTGCTGTCA
LOC_Os02g21710
OsAffx.2709.1.S1_at--16--10291Chr02:12907776..12907800 (25 bp)
TTTGCCAAGCAGAATGCCCTGCTCT
LOC_Os02g21710
OsAffx.2709.1.S1_at--1108--4531Chr02:12907791..12907815 (25 bp)
GCCCTGCTCTTTATTGAGGCATCAG
LOC_Os02g21710
OsAffx.2709.1.S1_at--203--6211Chr02:12907806..12907830 (25 bp)
GAGGCATCAGCGAAAGCTGCTCATA
LOC_Os02g21710
OsAffx.2709.1.S1_at--12--4771Chr02:12907821..12907842 (22 bp)
GCTGCTCATAATGTTAACGAGGCAT
LOC_Os02g21710
OsAffx.2709.1.S1_at--585--2591Chr02:12907924..12907944 (21 bp)
AACGAGGCATTCACTCTGACTGCTA
LOC_Os02g21710
OsAffx.2709.1.S1_at--397--5711Chr02:12907937..12907961 (25 bp)
GACTGCTAGAGCAATGTGCCACAAA
LOC_Os02g21710
OsAffx.2709.1.S1_at--874--3191Chr02:12907948..12907972 (25 bp)
CAATGTGCCACAAAGTTGAAGATGC
LOC_Os02g21710
Target Sequence 
TTTGATCATCTCACGACTTGGATAGAAGAGGCGAGACGGCTTGGAGTTGGAGGTGCCAAGCTGACAATATGTTTCATTGG
AAACAAATGCGACCTCTCTGATAGACGTGCTGTCAGCTACGAGGAAGGTGAACAGTTTGCCAAGCAGAATGCCCTGCTCT
TTATTGAGGCATCAGCGAAAGCTGCTCATAATGTTAACGAGGCATTCACTCTGACTGCTAGAGCAATGTGCCACAAAGTT
GAAGATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2709.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis