Browse Element(s) Details


OsAffx.27124.1.S1_at

Description tigr:9633.m03006
TID=OsAffx.27124.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g327707/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32740Os.11575.4.S1_x_at11/115+19089342..19091244transposon protein, putative, Pong sub-class
LOC_Os05g32740Os.11575.2.S1_a_at10/115+19089342..19091244transposon protein, putative, Pong sub-class
LOC_Os05g32740Os.11575.3.S1_x_at8/115+19089342..19091244transposon protein, putative, Pong sub-class
LOC_Os05g32750OsAffx.20858.1.S1_x_at10/115+19092111..19092868hypothetical protein
LOC_Os05g32750OsAffx.20858.4.S1_x_at9/115+19092111..19092868hypothetical protein
LOC_Os05g32760OsAffx.14927.1.S1_at11/115+19095361..19100596bZIP protein, putative, expressed
LOC_Os05g32760Os.47700.1.A1_at11/115+19095361..19100596bZIP protein, putative, expressed
LOC_Os05g32770OsAffx.27124.1.S1_at7/115+19111120..19113929hypothetical protein
LOC_Os05g32770OsAffx.24473.1.S1_at6/115+19111120..19113929hypothetical protein
LOC_Os05g32780OsAffx.27125.1.S1_at11/115+19120545..19121846hypothetical protein
LOC_Os05g32790OsAffx.14928.1.S1_at11/115+19124913..19125310hypothetical protein
LOC_Os05g32800OsAffx.4498.1.S1_at11/115+19130537..19131184hypothetical protein
LOC_Os05g32810OsAffx.14929.1.S1_x_at11/115+19134093..19135953expressed protein
LOC_Os05g32810Os.21778.1.S1_at11/115+19134093..19135953expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27124.1.S1_at--1143--1592Chr05:19113838..19113862 (25 bp)
AGCTGTACATCATCAAGATCTGCAT
LOC_Os05g32770
OsAffx.27124.1.S1_at--798--3872Chr05:19113836..19113860 (25 bp)
CTGTACATCATCAAGATCTGCATCT
LOC_Os05g32770
OsAffx.27124.1.S1_at--407--8651NONE
TGCGGCAGCCCAAAAACTTCTCAAC
NONE
OsAffx.27124.1.S1_at--542--8251NONE
GGCAGCCCAAAAACTTCTCAACTTT
NONE
OsAffx.27124.1.S1_at--13--5011NONE
GCAGCCCAAAAACTTCTCAACTTTC
NONE
OsAffx.27124.1.S1_at--335--3351NONE
CAGCCCAAAAACTTCTCAACTTTCT
NONE
OsAffx.27124.1.S1_at--829--2031Chr05:19112749..19112773 (25 bp)
ACTTTCTTCCTACTCCCACATAAAT
LOC_Os05g32770
OsAffx.27124.1.S1_at--301--10331Chr05:19112747..19112771 (25 bp)
TTTCTTCCTACTCCCACATAAATTC
LOC_Os05g32770
OsAffx.27124.1.S1_at--975--9571Chr05:19112745..19112769 (25 bp)
TCTTCCTACTCCCACATAAATTCAG
LOC_Os05g32770
OsAffx.27124.1.S1_at--370--10631Chr05:19112743..19112767 (25 bp)
TTCCTACTCCCACATAAATTCAGAC
LOC_Os05g32770
OsAffx.27124.1.S1_at--625--3711Chr05:19112740..19112764 (25 bp)
CTACTCCCACATAAATTCAGACATA
LOC_Os05g32770
Target Sequence 
AGCTGTACATCATCAAGATCTGCATCTCCATGCTCATCTGCGGCAGCCCAAAAACTTCTCAACTTTCTTCCTACTCCCAC
ATAAATTCAGACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis