Browse Element(s) Details


OsAffx.27130.1.S1_at

Description tigr:9633.m03030
TID=OsAffx.27130.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3300011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32970Os.52270.1.S1_at11/115+19244289..19248341expressed protein
LOC_Os05g32970Os.49159.1.A1_x_at11/115+19244289..19248341expressed protein
LOC_Os05g32970Os.53103.1.S1_at11/115+19244289..19248341expressed protein
LOC_Os05g32970Os.53103.1.S1_x_at11/115+19244289..19248341expressed protein
LOC_Os05g32980NANA5+19250881..19251281hypothetical protein
LOC_Os05g32990NANA5+19253513..19254490hypothetical protein
LOC_Os05g33000OsAffx.27130.1.S1_at11/115+19257694..19262043zinc finger family protein, putative, expressed
LOC_Os05g33020Os.37864.1.A1_at11/115+19263013..19270242secY family protein, putative, expressed
LOC_Os05g33010Os.11972.1.S1_at11/115+19270410..19274754DnaJ domain containing protein, expressed
LOC_Os05g33010Os.11972.1.S1_s_at11/115+19270410..19274754DnaJ domain containing protein, expressed
LOC_Os05g33030Os.47919.1.A1_s_at11/115+19276069..19280326Kinesin motor domain containing protein, expressed
LOC_Os05g33030Os.47919.1.A1_at9/115+19276069..19280326Kinesin motor domain containing protein, expressed
LOC_Os05g33030Os.24220.1.A1_at1/115+19276069..19280326Kinesin motor domain containing protein, expressed
LOC_Os05g33040Os.8306.1.S1_at11/115+19280554..19282706Cyclin, N-terminal domain containing protein, expressed
LOC_Os05g33050OsAffx.4503.1.S1_at11/115+19285596..19294403armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os05g33050Os.7606.1.S1_at11/115+19285596..19294403armadillo/beta-catenin repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27130.1.S1_at--1088--6171Chr05:19260285..19260309 (25 bp)
GAGGAAAGTCACCAGCCTAACTCCA
LOC_Os05g33000
OsAffx.27130.1.S1_at--1008--1071Chr05:19260258..19260282 (25 bp)
AGGGCACAAATTACTCTTGCTGTTA
LOC_Os05g33000
OsAffx.27130.1.S1_at--319--4971Chr05:19260226..19260250 (25 bp)
GCATCACAATGACCTTCGAGTTAAA
LOC_Os05g33000
OsAffx.27130.1.S1_at--340--9371Chr05:19260132..19260156 (25 bp)
TCGACTGAAGCTGATGTTCCCGACG
LOC_Os05g33000
OsAffx.27130.1.S1_at--145--8811Chr05:19260118..19260142 (25 bp)
TGTTCCCGACGCAGATGATAGTGAT
LOC_Os05g33000
OsAffx.27130.1.S1_at--518--7451Chr05:19260080..19260104 (25 bp)
GTGTCATCTGCTTGACAGAGCCAAG
LOC_Os05g33000
OsAffx.27130.1.S1_at--1116--7611Chr05:19260056..19260080 (25 bp)
GGGACACAGCTGTTTTTCCATGTAG
LOC_Os05g33000
OsAffx.27130.1.S1_at--315--3291Chr05:19259824..19259848 (25 bp)
CAAAGTTAGAAGTCCCGAGCCATAA
LOC_Os05g33000
OsAffx.27130.1.S1_at--912--5851Chr05:19259808..19259832 (25 bp)
GAGCCATAAAGACACCTTCGCTGGT
LOC_Os05g33000
OsAffx.27130.1.S1_at--231--3651Chr05:19259793..19259817 (25 bp)
CTTCGCTGGTATGGTTTTTGCTTCA
LOC_Os05g33000
OsAffx.27130.1.S1_at--1130--1071Chr05:19259633..19259657 (25 bp)
AGTGGTTTCTGTGAACCATCCTTTG
LOC_Os05g33000
Target Sequence 
GAGGAAAGTCACCAGCCTAACTCCACTAGGGCACAAATTACTCTTGCTGTTATAGAGAAGCATCACAATGACCTTCGAGT
TAAAGTTGTCAAGCAAATGTTGTGGAGTGATGGCGAGAAGTATGAGCTACAAGAAATTTATGGGATTGTCAACTCGACTG
AAGCTGATGTTCCCGACGCAGATGATAGTGATATGGGGAAAGAATGTGTCATCTGCTTGACAGAGCCAAGGGACACAGCT
GTTTTTCCATGTAGGCATTTGTGCATGTGCAGTGAATGTGCAAAAACTCTAAGGTTTCAAACAGATAAATGCCCCATATG
CAGACAACCTGTTGAGAAATTAATGGAGATCAAAGTTAGAAGTCCCGAGCCATAAAGACACCTTCGCTGGTATGGTTTTT
GCTTCATTTTATAATTTGTTGTATATAATCCTTTAAAATAGCATCTTCCTTCAAAGTTGATGTCTTTGTAGCAAGAAACT
GTTGATTTCATCATTGCACACTTGAACTCTATGTGTTAATTTTTGTGGGCATAGAGAGAAAAGTGGTTTCTGTGAACCAT
CCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis