Browse Element(s) Details


OsAffx.27135.1.S1_at

Description tigr:9633.m03051
TID=OsAffx.27135.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3320011/11Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33150Os.4976.1.S1_at8/115+19362755..1936434526 kDa endochitinase 1 precursor, putative, expressed
LOC_Os05g33160OsAffx.27132.1.S1_at11/115+19365823..19366590Leucine Rich Repeat family protein
LOC_Os05g33170OsAffx.27133.1.S1_at11/115+19369452..19370633hypothetical protein
LOC_Os05g33180NANA5+19372956..19373764hypothetical protein
LOC_Os05g33190Os.23511.1.S1_at10/115+19381990..19384745Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33200OsAffx.27135.1.S1_at11/115+19387083..19389968Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33210OsAffx.27136.1.S1_at11/115+19393642..19395101Ubiquinol-cytochrome c reductase complex 8.0 kDa protein, putative
LOC_Os05g33220Os.47979.1.A1_s_at11/115+19397690..19399024AWPM-19-like family protein, expressed
LOC_Os05g33220Os.47979.1.A1_at10/115+19397690..19399024AWPM-19-like family protein, expressed
LOC_Os05g33220Os.27995.1.A1_at5/115+19397690..19399024AWPM-19-like family protein, expressed
LOC_Os05g33230Os.53333.1.S1_at11/115+19399724..19405264Cobalt transport protein, expressed
LOC_Os05g33240Os.9722.1.S1_at11/115+19405242..19407444DNA-directed RNA polymerase II 19 kDa polypeptide, putative, expressed
LOC_Os05g33260Os.27259.1.S1_at10/115+19407534..19414457expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27135.1.S1_at--638--9931Chr05:19388236..19388257 (22 bp)
TACGGTTTCCGAGCACCAAAGCTGA
LOC_Os05g33200
OsAffx.27135.1.S1_at--750--9911Chr05:19388485..19388509 (25 bp)
TACTCCGGATACTACGTTGTGGTTC
LOC_Os05g33200
OsAffx.27135.1.S1_at--551--6991Chr05:19388520..19388544 (25 bp)
GTACGGTGACCCTTACACGGATGAT
LOC_Os05g33200
OsAffx.27135.1.S1_at--305--1931Chr05:19388536..19388560 (25 bp)
ACGGATGATCCAGCAAGGCCATTTT
LOC_Os05g33200
OsAffx.27135.1.S1_at--501--2671Chr05:19389125..19389149 (25 bp)
AAGCGGTAGTCATTTCACATCCTTC
LOC_Os05g33200
OsAffx.27135.1.S1_at--709--551Chr05:19389143..19389167 (25 bp)
ATCCTTCGCTAGTGACCGTACATGA
LOC_Os05g33200
OsAffx.27135.1.S1_at--475--3371Chr05:19389603..19389627 (25 bp)
CACCACTTGTTGTGCACCAGTTTGA
LOC_Os05g33200
OsAffx.27135.1.S1_at--151--2211Chr05:19389645..19389820 (25 bp)
ACAACAGGGTTGATCACTTCGTGAA
LOC_Os05g33200
OsAffx.27135.1.S1_at--706--591Chr05:19389841..19389865 (25 bp)
ATGCCTTCGCTTGCAGATACAACGC
LOC_Os05g33200
OsAffx.27135.1.S1_at--99--551Chr05:19389871..19389895 (25 bp)
ATCCGTTCGCCGTCAAAACTGCAGA
LOC_Os05g33200
OsAffx.27135.1.S1_at--473--9091Chr05:19389905..19389929 (25 bp)
TGCTGACATGGTCCAGTGGTTCGAC
LOC_Os05g33200
Target Sequence 
TACGGTTTCCGAGCACCAAAGCTGAGACAAATAGCGGACAAAGTTGCATACTCCGGATACTACGTTGTGGTTCCTGATTT
GTTGTACGGTGACCCTTACACGGATGATCCAGCAAGGCCATTTTGGGTGTGGATCATGGCTCACTCTCCGGAGGAAGCAG
CTGAAAAGACTAAACCGCTCATTGCGGTTCTGAAGAAGGAAGGGATGTCCTCTGTTGGGGTTGGAGGTTATTGCTGGGGT
GGAAAGGTGGCCGTGGAACTATCAAAGACCGAAGAAACCCAAGCGGTAGTCATTTCACATCCTTCGCTAGTGACCGTACA
TGACATGACAGAGGTCAAACGTCCAATTGAGATTCTTGGAGGTGAGCGTGATACCATCACGCCACCACTTGTTGTGCACC
AGTTTGAGCATGCCTTAGATCAGAACAACAGGGTTGATCACTTCGTGAAGACCTTCCCCAAGGCGCCCCATGCCTTCGCT
TGCAGATACAACGCCAGCGATCCGTTCGCCGTCAAAACTGCAGAAGAAGCTCGTGCTGACATGGTCCAGTGGTTCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis