Browse Element(s) Details


OsAffx.27160.1.S1_at

Description tigr:9633.m03199
TID=OsAffx.27160.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3452011/11Ulp1 protease family, C-terminal catalytic domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34460Os.7315.2.S1_x_at11/115+20350211..20354764DegP protease, putative, expressed
LOC_Os05g34460Os.7315.1.S1_at10/115+20350211..20354764DegP protease, putative, expressed
LOC_Os05g34470Os.13995.1.S1_at11/115+20355189..20357037expressed protein
LOC_Os05g34480Os.53543.1.A1_at11/115+20359578..20362920expressed protein
LOC_Os05g34490OsAffx.30677.5.S1_x_at11/115+20365054..20367044hypothetical protein
LOC_Os05g34490OsAffx.30677.1.S1_x_at5/115+20365054..20367044hypothetical protein
LOC_Os05g34500Os.52658.1.S1_at11/115+20372362..20373077expressed protein
LOC_Os05g34510OsAffx.27159.1.S1_at10/115+20374231..20375850hypothetical protein
LOC_Os05g34510Os.19995.1.S1_at1/115+20374231..20375850hypothetical protein
LOC_Os05g34520OsAffx.27160.1.S1_at11/115+20378572..20384642Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os05g34530NANA5+20387983..20388291hypothetical protein
LOC_Os05g34540Os.1321.1.S1_at11/115+20394207..20400478Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os05g34540OsAffx.8898.1.S1_at5/115+20394207..20400478Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os05g34550Os.26993.1.S1_at11/115+20401808..20406977MLO-like protein 1, putative, expressed
LOC_Os05g34560OsAffx.14960.1.S1_at11/115+20408243..20408855hypothetical protein
LOC_Os05g34560Os.55261.1.S1_at1/115+20408243..20408855hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27160.1.S1_at--429--9771Chr05:20383538..20383562 (25 bp)
TAATGCACTCATTTCACCACAAGAT
LOC_Os05g34520
OsAffx.27160.1.S1_at--908--2651Chr05:20383563..20383587 (25 bp)
AAGCGAACGCGCAGGAAGACTACTC
LOC_Os05g34520
OsAffx.27160.1.S1_at--316--4851Chr05:20383626..20383650 (25 bp)
GCTACACAACTGACTGCTACTAAGA
LOC_Os05g34520
OsAffx.27160.1.S1_at--947--7071Chr05:20384283..20384307 (25 bp)
GTAATTGTTCCCATCTTTCAACATG
LOC_Os05g34520
OsAffx.27160.1.S1_at--458--2851Chr05:20384350..20384374 (25 bp)
AAGTCTCTGTCTTGATTTCCACAAC
LOC_Os05g34520
OsAffx.27160.1.S1_at--108--2331Chr05:20384402..20384426 (25 bp)
AAAGTCTGCTAGAACATTCGCGGAG
LOC_Os05g34520
OsAffx.27160.1.S1_at--677--3951Chr05:20384422..20384446 (25 bp)
CGGAGCAGGCACATGATGGCTTCAT
LOC_Os05g34520
OsAffx.27160.1.S1_at--493--8771Chr05:20384501..20384525 (25 bp)
TGTTTTTATCAAATCCCGTCCCTGT
LOC_Os05g34520
OsAffx.27160.1.S1_at--74--4011Chr05:20384517..20384541 (25 bp)
CGTCCCTGTACTTTAGCAACTATGG
LOC_Os05g34520
OsAffx.27160.1.S1_at--1008--2951Chr05:20384559..20384583 (25 bp)
AATGGCTATGAAGCGTCCTTGCCAC
LOC_Os05g34520
OsAffx.27160.1.S1_at--144--3371Chr05:20384581..20384605 (25 bp)
CACCTGCTAGTGTATTCCCTCTTAA
LOC_Os05g34520
Target Sequence 
TAATGCACTCATTTCACCACAAGATAAGCGAACGCGCAGGAAGACTACTCCTAGTAGTAGTTTCCATGAACCCCCGAAAT
TTGAAGTAGCTACACAACTGACTGCTACTAAGACAGCTGAGACTGGCGATGGAATGCAAGGGATTGGAACTGAGATTGCT
TCTTGGTTGATGGGTGGAAAAAAAGACGTTGCTTCAGGAAAAAAACTGAGAAATATAAGACAGAGATTTGTAATTGTTCC
CATCTTTCAACATGAAGAATGGACTGTGTTTTTTGTTGATACTTGCTCAAGTAACCAAGTCTCTGTCTTGATTTCCACAA
CAACAAAATTAGGAGCCAGTGAGATTGAAAAGTCTGCTAGAACATTCGCGGAGCAGGCACATGATGGCTTCATGCATGGT
GGCTACGCCTCACCATTTCCCGTCCTGGACCAGATAAGAGCGGCAACTGTTTTTATCAAATCCCGTCCCTGTACTTTAGC
AACTATGGTCTACCTTGAAAGATACAATGGCTATGAAGCGTCCTTGCCACCTGCTAGTGTATTCCCTCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis