Browse Element(s) Details


OsAffx.27184.1.S1_at

Description tigr:9633.m03332
TID=OsAffx.27184.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to protein kinase SPK-3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3576011/11Serine/threonine-protein kinase SAPK7, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35700NANA5+21116650..21117224hypothetical protein
LOC_Os05g35710Os.8839.1.S1_at11/115+21118679..21121719expressed protein
LOC_Os05g35710Os.8839.2.S1_at11/115+21118679..21121719expressed protein
LOC_Os05g35710Os.8839.2.S1_x_at11/115+21118679..21121719expressed protein
LOC_Os05g35720Os.18304.1.S1_at9/115+21122681..21124515TMEM18 protein, putative, expressed
LOC_Os05g35730Os.32965.1.S1_at11/115+21124736..21131244hydrolase, alpha/beta fold family protein, expressed
LOC_Os05g35740Os.9669.1.S1_at11/115+21131630..21133724Pi starvation-induced protein, putative, expressed
LOC_Os05g35750Os.35344.18.S1_x_at10/115+21135933..21138775hypothetical protein
LOC_Os05g35750Os.35344.3.S1_x_at9/115+21135933..21138775hypothetical protein
LOC_Os05g35750OsAffx.22940.5.S1_at7/115+21135933..21138775hypothetical protein
LOC_Os05g35750OsAffx.22940.5.S1_x_at5/115+21135933..21138775hypothetical protein
LOC_Os05g35760OsAffx.27184.1.S1_at11/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35760Os.44554.1.A1_at1/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35760Os.56292.1.S1_x_at1/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35770OsAffx.27185.1.S1_at11/115+21146238..21147844Serine/threonine-protein kinase SAPK9, putative
LOC_Os05g35780NANA5+21149277..21149765hypothetical protein
LOC_Os05g35789NANA5+21151067..21151303NA
LOC_Os05g35800OsAffx.27186.1.S1_at11/115+21157567..21158431expressed protein
LOC_Os05g35810OsAffx.27187.1.S1_at11/115+21164478..21165906hypothetical protein
LOC_Os05g35820OsAffx.27188.1.S1_at11/115+21167622..21168724hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27184.1.S1_at--844--6771Chr05:21142443..21142467 (25 bp)
GTTACTCTCTATGTCATGCTTGTGG
LOC_Os05g35760
OsAffx.27184.1.S1_at--235--10131Chr05:21142235..21142259 (25 bp)
TATGAGATACCACAGCAAGTCCACA
LOC_Os05g35760
OsAffx.27184.1.S1_at--1074--2851Chr05:21142219..21142243 (25 bp)
AAGTCCACATATCTACTGATTGCAG
LOC_Os05g35760
OsAffx.27184.1.S1_at--124--5971Chr05:21142195..21142219 (25 bp)
GAGAACTCATATCACGAATCTTTGT
LOC_Os05g35760
OsAffx.27184.1.S1_at--548--5251Chr05:21142180..21142204 (25 bp)
GAATCTTTGTCAGTGATCCATCGAA
LOC_Os05g35760
OsAffx.27184.1.S1_at--988--511Chr05:21141984..21142062 (25 bp)
ATCGAAGAGAATCACCATGCAGGAA
LOC_Os05g35760
OsAffx.27184.1.S1_at--392--10551Chr05:21141941..21141965 (25 bp)
TTCTTGAAGAATTTCCCGAGGGAGC
LOC_Os05g35760
OsAffx.27184.1.S1_at--996--6191Chr05:21141908..21141932 (25 bp)
GAGGCACAATCTATCTACTTCACAA
LOC_Os05g35760
OsAffx.27184.1.S1_at--1081--671Chr05:21141880..21141904 (25 bp)
ATGACTATTTCCCTACTTTCTCAGC
LOC_Os05g35760
OsAffx.27184.1.S1_at--157--2051Chr05:21141866..21141890 (25 bp)
ACTTTCTCAGCCCAAACTAGTGGAG
LOC_Os05g35760
OsAffx.27184.1.S1_at--699--1811Chr05:21141807..21141831 (25 bp)
ACCCAAATCATTCGGCGATGGCTAT
LOC_Os05g35760
Target Sequence 
GTTACTCTCTATGTCATGCTTGTGGGGGCCTACTCATTGAAGACAAGGATGATCCCAAGAATATTATGAAGACCGTCAAG
CTAATAAAAGCAATTCAATATGAGATACCACAGCAAGTCCACATATCTACTGATTGCAGAGAACTCATATCACGAATCTT
TGTCAGTGATCCATCGAAGAGAATCACCATGCAGGAAATAAAGAACCATCCATGGTTCTTGAAGAATTTCCCGAGGGAGC
TCACAGAAGAGGCACAATCTATCTACTTCACAAAGAATGACTATTTCCCTACTTTCTCAGCCCAAACTAGTGGAGAAATC
ATGACTTTCATGGAAGAAGCGCAGAAAATACCCAAATCATTCGGCGATGGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis