Browse Element(s) Details


OsAffx.27185.1.S1_at

Description tigr:9633.m03333
TID=OsAffx.27185.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3577011/11Serine/threonine-protein kinase SAPK9, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35710Os.8839.1.S1_at11/115+21118679..21121719expressed protein
LOC_Os05g35710Os.8839.2.S1_at11/115+21118679..21121719expressed protein
LOC_Os05g35710Os.8839.2.S1_x_at11/115+21118679..21121719expressed protein
LOC_Os05g35720Os.18304.1.S1_at9/115+21122681..21124515TMEM18 protein, putative, expressed
LOC_Os05g35730Os.32965.1.S1_at11/115+21124736..21131244hydrolase, alpha/beta fold family protein, expressed
LOC_Os05g35740Os.9669.1.S1_at11/115+21131630..21133724Pi starvation-induced protein, putative, expressed
LOC_Os05g35750Os.35344.18.S1_x_at10/115+21135933..21138775hypothetical protein
LOC_Os05g35750Os.35344.3.S1_x_at9/115+21135933..21138775hypothetical protein
LOC_Os05g35750OsAffx.22940.5.S1_at7/115+21135933..21138775hypothetical protein
LOC_Os05g35750OsAffx.22940.5.S1_x_at5/115+21135933..21138775hypothetical protein
LOC_Os05g35760OsAffx.27184.1.S1_at11/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35760Os.44554.1.A1_at1/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35760Os.56292.1.S1_x_at1/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35770OsAffx.27185.1.S1_at11/115+21146238..21147844Serine/threonine-protein kinase SAPK9, putative
LOC_Os05g35780NANA5+21149277..21149765hypothetical protein
LOC_Os05g35789NANA5+21151067..21151303NA
LOC_Os05g35800OsAffx.27186.1.S1_at11/115+21157567..21158431expressed protein
LOC_Os05g35810OsAffx.27187.1.S1_at11/115+21164478..21165906hypothetical protein
LOC_Os05g35820OsAffx.27188.1.S1_at11/115+21167622..21168724hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0010119biological_processregulation of stomatal movement
GO:0004672molecular_functionprotein kinase activity
GO:0009931molecular_functioncalcium-dependent protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27185.1.S1_at--960--8951Chr05:21147771..21147795 (25 bp)
TGACACGGCTGATGTGCAACCGCGA
LOC_Os05g35770
OsAffx.27185.1.S1_at--219--3351Chr05:21147576..21147738 (25 bp)
CACGCGGCAATCACCGGATTAACAA
LOC_Os05g35770
OsAffx.27185.1.S1_at--6--591Chr05:21147095..21147523 (25 bp)
ATCCAGTTCATAGAGGCGATCCTAA
LOC_Os05g35770
OsAffx.27185.1.S1_at--709--6371Chr05:21147078..21147102 (25 bp)
GATCCTAACTCATACACATCTTGCA
LOC_Os05g35770
OsAffx.27185.1.S1_at--136--8071Chr05:21147029..21147053 (25 bp)
GGAGAACTCTTTGATCGGATTGTCG
LOC_Os05g35770
OsAffx.27185.1.S1_at--698--871Chr05:21146893..21146917 (25 bp)
AGGCCAGATATTTCTTCCAGCAATT
LOC_Os05g35770
OsAffx.27185.1.S1_at--762--7051Chr05:21146862..21146882 (21 bp)
GTAAGCTATTGCCATCACATGTCAT
LOC_Os05g35770
OsAffx.27185.1.S1_at--576--9731Chr05:21146488..21146512 (25 bp)
TCAATGTTGCATTCAAGGCCCAAAT
LOC_Os05g35770
OsAffx.27185.1.S1_at--203--2271Chr05:21146467..21146491 (25 bp)
AAATCAGCAGTTGGGACTCCGGCAT
LOC_Os05g35770
OsAffx.27185.1.S1_at--771--8111Chr05:21146454..21146478 (25 bp)
GGACTCCGGCATATATTGCACCAGA
LOC_Os05g35770
OsAffx.27185.1.S1_at--226--3431Chr05:21146433..21146457 (25 bp)
CAGAGATACTAAACCTCCAGGAGTA
LOC_Os05g35770
Target Sequence 
TGACACGGCTGATGTGCAACCGCGACACCGGGGAGCTCGTCGCCGTCAAGACCATCCCACGCGGCAATCACCGGATTAAC
AAGAGCGCGTACCGGGAGATCATCAACCACCGTTCGCTGCGGCACCCAAACATCATCCAGTTCATAGAGGCGATCCTAAC
TCATACACATCTTGCAATCGTGATGGAGTATGCATCTGGTGGAGAACTCTTTGATCGGATTGTCGATCTTGAGCGATTTA
GTGAGGATGAGGCCAGATATTTCTTCCAGCAATTGATTTGGGGTGTAAGCTATTGCCATCACATGTCATCAATGTTGCAT
TCAAGGCCCAAATCAGCAGTTGGGACTCCGGCATATATTGCACCAGAGATACTAAACCTCCAGGAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27185.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis