Browse Element(s) Details


OsAffx.27208.1.S1_at

Description tigr:9633.m03453
TID=OsAffx.27208.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3736011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37320OsAffx.20171.1.S1_at2/115+21748384..21751447transposon protein, putative, Mutator sub-class
LOC_Os05g37330Os.12360.1.S1_at11/115+21752238..2175449660s Acidic ribosomal protein, expressed
LOC_Os05g37340Os.15514.1.S1_at8/115+21756408..21759581expressed protein
LOC_Os05g37350OsAffx.14993.1.S1_at11/115+21760585..21773259HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g37350Os.53059.1.S1_x_at11/115+21760585..21773259HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g37350OsAffx.14993.1.S1_x_at11/115+21760585..21773259HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g37350Os.26665.1.S1_x_at8/115+21760585..21773259HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g37360OsAffx.27208.1.S1_at11/115+21774732..21775010hypothetical protein
LOC_Os05g37370NANA5+21781235..21781789retrotransposon protein, putative, unclassified
LOC_Os05g37380NANA5+21782334..21788489retrotransposon protein, putative, unclassified
LOC_Os05g37390Os.18982.1.S1_at11/115+21792752..21795268G10 protein homolog, putative, expressed
LOC_Os05g37400Os.15514.1.S1_at11/115+21798628..21805868expressed protein
LOC_Os05g37400Os.15514.1.S2_at11/115+21798628..21805868expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27208.1.S1_at--150--3711Chr05:21774949..21774973 (25 bp)
CTAGGGTGAGCAGCGCGACTACTTC
LOC_Os05g37360
OsAffx.27208.1.S1_at--620--5931Chr05:21774942..21774966 (25 bp)
GAGCAGCGCGACTACTTCCGCGGAA
LOC_Os05g37360
OsAffx.27208.1.S1_at--942--2051Chr05:21774929..21774953 (25 bp)
ACTTCCGCGGAAGCCTGGTGGACAA
LOC_Os05g37360
OsAffx.27208.1.S1_at--1055--5931Chr05:21774901..21774925 (25 bp)
GAGCAGCAAGAGAACCAGCGCCGGA
LOC_Os05g37360
OsAffx.27208.1.S1_at--563--5431Chr05:21774890..21774914 (25 bp)
GAACCAGCGCCGGAATTGACGAGCA
LOC_Os05g37360
OsAffx.27208.1.S1_at--399--4491Chr05:21774882..21774906 (25 bp)
GCCGGAATTGACGAGCACGCATGCC
LOC_Os05g37360
OsAffx.27208.1.S1_at--10--3171Chr05:21774877..21774901 (25 bp)
AATTGACGAGCACGCATGCCACCGT
LOC_Os05g37360
OsAffx.27208.1.S1_at--80--9211Chr05:21774861..21774885 (25 bp)
TGCCACCGTCGCCACCAATGAGGGT
LOC_Os05g37360
OsAffx.27208.1.S1_at--1053--4331Chr05:21774850..21774874 (25 bp)
CCACCAATGAGGGTGCGTGGGCCAC
LOC_Os05g37360
OsAffx.27208.1.S1_at--318--3331Chr05:21774828..21774852 (25 bp)
CACGGACGGAGAGCTTGGCGGCGAC
LOC_Os05g37360
OsAffx.27208.1.S1_at--860--8511Chr05:21774781..21774805 (25 bp)
TGGACAGGGCCGGTCCTGTGATTTT
LOC_Os05g37360
Target Sequence 
CTAGGGTGAGCAGCGCGACTACTTCCGCGGAAGCCTGGTGGACAAGAAGAGCAGCAAGAGAACCAGCGCCGGAATTGACG
AGCACGCATGCCACCGTCGCCACCAATGAGGGTGCGTGGGCCACGGACGGAGAGCTTGGCGGCGACGAGGGTGCCGGGGC
CGAGCTTGTGGACAGGGCCGGTCCTGTGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis