Browse Element(s) Details


OsAffx.27287.1.S1_at

Description tigr:9633.m04000
TID=OsAffx.27287.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4307010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43040Os.2245.1.S1_at11/115+24914112..24916352beta-9 tubulin, putative, expressed
LOC_Os05g43050OsAffx.15075.1.S1_at11/115+24917080..24918281hypothetical protein
LOC_Os05g43050Os.4009.1.S1_at1/115+24917080..24918281hypothetical protein
LOC_Os05g43060Os.26435.1.A1_at11/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060Os.26381.3.S1_x_at11/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060OsAffx.4601.1.S1_x_at9/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060OsAffx.4601.1.S1_at1/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43070OsAffx.4602.1.S1_at10/115+24932262..24937267hypothetical protein
LOC_Os05g43070OsAffx.27287.1.S1_at10/115+24932262..24937267hypothetical protein
LOC_Os05g43070Os.41554.1.S1_at1/115+24932262..24937267hypothetical protein
LOC_Os05g43080OsAffx.27288.1.S1_x_at11/115+24938947..24939275hypothetical protein
LOC_Os05g43090OsAffx.4603.1.S1_at11/115+24939517..24940801GDSL-like Lipase/Acylhydrolase family protein
LOC_Os05g43100OsAffx.15076.1.S1_at11/115+24941929..24944024GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43100OsAffx.2812.1.S1_at1/115+24941929..24944024GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43110OsAffx.27289.1.S1_at11/115+24946588..24949630GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43120OsAffx.15077.1.S1_at10/115+24953002..24955693GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43130Os.9927.1.S1_at11/115+24958319..24960267Brix domain containing protein 1, putative, expressed
LOC_Os05g43140Os.49209.1.S1_at10/115+24961430..24962261expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27287.1.S1_at--1124--7231Chr05:24934580..24934604 (25 bp)
GTCGCCGGCGAAACTGGCATTCTCT
LOC_Os05g43070
OsAffx.27287.1.S1_at--896--8451Chr05:24934548..24934572 (25 bp)
TGGCCGTCGCTCAGGATGACGAGTT
LOC_Os05g43070
OsAffx.27287.1.S1_at--225--691Chr05:24934533..24934557 (25 bp)
ATGACGAGTTGAGCCTTCGTCTCGA
LOC_Os05g43070
OsAffx.27287.1.S1_at--239--10631Chr05:24934518..24934542 (25 bp)
TTCGTCTCGAAGCTGTCACCGGCGG
LOC_Os05g43070
OsAffx.27287.1.S1_at--843--10131Chr05:24934482..24934506 (25 bp)
TATCCATGGCCGTTTCTCGGAGCTA
LOC_Os05g43070
OsAffx.27287.1.S1_at--1150--9471Chr05:24934468..24934492 (25 bp)
TCTCGGAGCTATCTGTCGTTTGAAG
LOC_Os05g43070
OsAffx.27287.1.S1_at--561--1551NONE
AGCTAGTTCGGAGGAGGGACTTCAA
NONE
OsAffx.27287.1.S1_at--310--7611Chr05:24932446..24932470 (25 bp)
GGGCACATGAGGCAGAATCCAACAT
LOC_Os05g43070
OsAffx.27287.1.S1_at--288--5271Chr05:24932432..24932456 (25 bp)
GAATCCAACATACTTGCGGTCAAAC
LOC_Os05g43070
OsAffx.27287.1.S1_at--1119--8011Chr05:24932403..24932427 (25 bp)
GGAGGAGACAGCAACCAGCACACGC
LOC_Os05g43070
OsAffx.27287.1.S1_at--736--4351Chr05:24932309..24932333 (25 bp)
CCAGAGTACCTCCTTGACAACGAAG
LOC_Os05g43070
Target Sequence 
GTCGCCGGCGAAACTGGCATTCTCTGCCGTGGTGGCCGTCGCTCAGGATGACGAGTTGAGCCTTCGTCTCGAAGCTGTCA
CCGGCGGCGAGGGTGGCCTATCCATGGCCGTTTCTCGGAGCTATCTGTCGTTTGAAGCGCAGAAGCATGGGAGCAGCCTA
GCCGAGCTGGTGATGGCGAAAGACTTGGAGCTAGTTCGGAGGAGGGACTTCAAAGGCAAGGAAGGTGTGACGACAGGAGG
GGCACATGAGGCAGAATCCAACATACTTGCGGTCAAACTCATGGAGGAGACAGCAACCAGCACACGCCGTCCAGAAGGTG
GGCAGGACGGGGGCCGCAGCCTGCTCGGCAAGCGCGATGTAGGTGTTGGTGGCGCGCCAGAGTACCTCCTTGACAACGAA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis