Browse Element(s) Details


OsAffx.27387.1.S1_at

Description gb:NM_189429.1
DB_XREF= gi:34905941
GEN=OJ1656_A11.12
TID=OsAffx.27387.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) lipase-like protein (OJ1656_A11.12), mRNA.
PROD=lipase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g737405/11lipase class 3 family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73670Os.8761.3.S1_x_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.2.S1_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.1.S1_s_at10/111+43011790..43016248expressed protein
LOC_Os01g73680Os.27288.2.S1_x_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.2.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.1.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.1.S1_x_at9/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.2.S1_at1/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73690Os.42980.1.S1_at11/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73690Os.26995.1.S1_at1/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73700Os.42977.2.S1_x_at2/111+43027029..43028099transposon protein, putative, unclassified
LOC_Os01g73710Os.42977.2.S1_x_at11/111+43031130..43032223transposon protein, putative, unclassified
LOC_Os01g73720Os.42977.1.S1_at11/111+43033372..43034829transposon protein, putative, unclassified, expressed
LOC_Os01g73720Os.42977.2.S1_x_at4/111+43033372..43034829transposon protein, putative, unclassified, expressed
LOC_Os01g73730Os.42975.1.S1_x_at8/111+43037666..43038849Root cap family protein, expressed
LOC_Os01g73730Os.42975.1.S1_at5/111+43037666..43038849Root cap family protein, expressed
LOC_Os01g73740OsAffx.27387.1.S1_at5/111+43040151..43040659lipase class 3 family protein, putative
LOC_Os01g73750OsAffx.11843.1.S1_at11/111+43042572..43048410Leucine Rich Repeat family protein, expressed
LOC_Os01g73760Os.8794.3.S1_x_at11/111+43050362..43053433tRNA delta-isopentenylpyrophosphate transferase family protein, expressed
LOC_Os01g73770Os.40428.1.S1_at11/111+43054274..43055187CRT/DRE binding factor 1, putative, expressed
LOC_Os01g73780Os.8226.1.S1_at10/111+43062842..43064765expressed protein
LOC_Os01g73790Os.4743.1.S1_at11/111+43065613..43069022NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27387.1.S1_at--661--9491Chr01:43040791..43040815 (25 bp)
TCTCGCGCTTCCGCAGGTGCAGGGA
NONE
OsAffx.27387.1.S1_at--396--9431Chr01:43040713..43040737 (25 bp)
TCGGGCGCCGTAACATCTTCGTCGC
NONE
OsAffx.27387.1.S1_at--54--1931Chr01:43040678..43040702 (25 bp)
ACGGTGCAGTCGCTACAATGGATCA
NONE
OsAffx.27387.1.S1_at--89--9051Chr01:43040674..43040698 (25 bp)
TGCAGTCGCTACAATGGATCAAGGA
NONE
OsAffx.27387.1.S1_at--1018--831Chr01:43040648..43040672 (25 bp)
ATGGAGTTCGTCAATGGCGCCACCC
NONE
OsAffx.27387.1.S1_at--205--6071Chr01:43040645..43040669 (25 bp)
GAGTTCGTCAATGGCGCCACCCAAG
NONE
OsAffx.27387.1.S1_at--218--2611Chr01:43040339..43040363 (25 bp)
AACGCGTTTGACATCGTCGCGAATG
LOC_Os01g73740
OsAffx.27387.1.S1_at--41--4651Chr01:43040336..43040360 (25 bp)
GCGTTTGACATCGTCGCGAATGGAT
LOC_Os01g73740
OsAffx.27387.1.S1_at--641--7231Chr01:43040324..43040348 (25 bp)
GTCGCGAATGGATACAACAGGGCAC
LOC_Os01g73740
OsAffx.27387.1.S1_at--914--7171Chr01:43040228..43040252 (25 bp)
GTCGGCGGGCACGACTTCAAGAGTC
LOC_Os01g73740
OsAffx.27387.1.S1_at--361--10512Chr05:16388293..16388317 (25 bp)
TTCAAGAGTCGCTTCGACGGCGCAC
NONE
Target Sequence 
TCTCGCGCTTCCGCAGGTGCAGGGAGAGCAACTGGATCGGGTACGTCGCGGTGGCCACCGACGAAGGGAAGGCCGCGCTC
GGGCGCCGTAACATCTTCGTCGCGTGGCGCGGCACGGTGCAGTCGCTACAATGGATCAAGGACATGGAGTTCGTCAATGG
CGCCACCCAAGGACCTCCTCCGGGACAAAGCCTCCGACGCCATGGNNNNNNNNNNATGGCTGTCCATGTACACCTCCAGT
GACTCTGAGTCCAGCCACAACAAGGACAATGCTCGAGATCAGGTGTTGAGCGAGGTGGCGAGGGTGGTGAGCATGTACCA
GGGCGAGGAGCTGAGCATCAGGGTGACGGGACACAGCCTTGGCGCCGCACTCGCGACGCTGAACGCGTTTGACATCGTCG
CGAATGGATACAACAGGGCACCCCGCGCCGCGGTGGCGGCGCTGGCGGCGACGGGCTGCCCGGTCACCGCGTTCGTGTTC
GCCAACCCGCGCGTCGGCGGGCACGACTTCAAGAGTCGCTTCGACGGCGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27387.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis