Browse Element(s) Details


OsAffx.27390.1.S1_at

Description tigr:9633.m04715
TID=OsAffx.27390.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to auxin efflux carrier protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5014011/11Auxin efflux carrier component 3, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50100Os.55247.1.S1_at10/115+28627048..28627954expressed protein
LOC_Os05g50110Os.55591.1.S1_at11/115+28633222..28634507Oleosin family protein, expressed
LOC_Os05g50110Os.51746.1.S1_s_at11/115+28633222..28634507Oleosin family protein, expressed
LOC_Os05g50120Os.34647.1.S1_at11/115+28637740..28643250Protein kinase domain containing protein, expressed
LOC_Os05g50120Os.34984.3.S1_x_at1/115+28637740..28643250Protein kinase domain containing protein, expressed
LOC_Os05g50130OsAffx.15176.1.S1_at10/115+28648050..28650974Homeobox associated leucine zipper family protein
LOC_Os05g50140OsAffx.27390.1.S1_at11/115+28652106..28654544Auxin efflux carrier component 3, putative
LOC_Os05g50150NANA5+28656100..28656375hypothetical protein
LOC_Os05g50160OsAffx.27391.1.S1_at11/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50160OsAffx.27391.1.S1_x_at11/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50160OsAffx.23670.1.S1_x_at2/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50170Os.52893.1.S1_at11/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50170OsAffx.9402.1.S1_x_at1/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50170OsAffx.9402.1.S1_at1/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50180Os.8889.1.S1_at11/115+28674633..28675422EF hand family protein, expressed
LOC_Os05g50190Os.22907.1.S1_at11/115+28676892..28680600protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007389biological_processpattern specification
GO:0009606biological_processtropism
GO:0009630biological_processgravitropism
GO:0009926biological_processauxin polar transport
GO:0009942biological_processlongitudinal axis specification
GO:0010082biological_processregulation of root meristem size
GO:0048364biological_processroot development
GO:0005886cellular_componentplasma membrane
GO:0012506cellular_componentvesicle membrane
GO:0016328cellular_componentlateral plasma membrane
GO:0005215molecular_functiontransporter activity
GO:0009672molecular_functionauxin:hydrogen symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27390.1.S1_at--815--7391Chr05:28653181..28653205 (25 bp)
GTGATGCTGCGGCTCATCCTCACTA
LOC_Os05g50140
OsAffx.27390.1.S1_at--124--9691Chr05:28653162..28653186 (25 bp)
TCACTACGGTTTGGCGCCGGCTGAT
LOC_Os05g50140
OsAffx.27390.1.S1_at--395--7911Chr05:28652968..28652992 (25 bp)
GGTTCCACATCACGATGCCAATCAT
LOC_Os05g50140
OsAffx.27390.1.S1_at--214--1192Chr06:7276093..7276281 (25 bp)
AGTAGCCAAATCAATCTCCATTCTC
NONE
OsAffx.27390.1.S1_at--424--112Chr06:23890535..23890889 (25 bp)
ATTCTCTCCGATGCAGGGTTAGGCA
NONE
OsAffx.27390.1.S1_at--33--931Chr05:28652905..28652928 (24 bp)
AGGCATGGCCATGTTTAGCTTAGGA
LOC_Os05g50140
OsAffx.27390.1.S1_at--624--51Chr05:28652796..28652820 (25 bp)
ATTGTTCATGGCCACGCAGCCGAAG
LOC_Os05g50140
OsAffx.27390.1.S1_at--454--4811Chr05:28652664..28652688 (25 bp)
GCTCTTGCGTATCGCCATTGTTCAG
LOC_Os05g50140
OsAffx.27390.1.S1_at--531--891Chr05:28652534..28652558 (25 bp)
AGGCCGCCCTGCCACAAGGAATTGT
LOC_Os05g50140
OsAffx.27390.1.S1_at--740--5191Chr05:28652516..28652540 (25 bp)
GAATTGTGCCATTTGTGTTCGCTAA
LOC_Os05g50140
OsAffx.27390.1.S1_at--451--4011Chr05:28652497..28652521 (25 bp)
CGCTAAGGAATACAACCTCCACGCT
LOC_Os05g50140
Target Sequence 
GTGATGCTGCGGCTCATCCTCACTACGGTTTGGCGCCGGCTGATCCGGAACCCCAACACGTACGCCAGCCTCATCGGCCT
CACCTGGTCGCTCATCGCGTTCCGGTTCCACATCACGATGCCAATCATAGTAGCCAAATCAATCTCCATTCTCTCCGATG
CAGGGTTAGGCATGGCCATGTTTAGCTTAGGATTGTTCATGGCCACGCAGCCGAAGATCATCGCCTGCGGCTACTCCGTC
GCGGCGGCCAGCATGGGCGTCCGCTTCTTCTTCGGCCCCGCCATCATGGCCGCCGCGTCCGCCGCCGTCGGCATCCGAGG
CACGCTCTTGCGTATCGCCATTGTTCAGGCCGCCCTGCCACAAGGAATTGTGCCATTTGTGTTCGCTAAGGAATACAACC
TCCACGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27390.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis