Browse Element(s) Details


OsAffx.27473.1.S1_at

Description tigr:9634.m00587
TID=OsAffx.27473.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0658011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06550Os.44762.1.S1_at11/116+3073389..3076782expressed protein
LOC_Os06g06560Os.12725.1.S1_at11/116+3078060..3085809Soluble starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g06560OsAffx.24317.1.S1_x_at2/116+3078060..3085809Soluble starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g06570Os.52871.1.S1_x_at11/116+3089169..3089826expressed protein
LOC_Os06g06580OsAffx.27473.1.S1_at11/116+3092919..3094988hypothetical protein
LOC_Os06g06590OsAffx.27474.1.S1_at11/116+3095000..3096884expressed protein
LOC_Os06g06600Os.4354.1.S1_at11/116+3103605..3106509F-box domain containing protein, expressed
LOC_Os06g06610Os.4355.1.S1_at9/116+3110550..3114194expressed protein
LOC_Os06g06620OsAffx.4742.2.S1_s_at11/116+3114722..3115027hypothetical protein
LOC_Os06g06620OsAffx.4742.1.S1_x_at9/116+3114722..3115027hypothetical protein
LOC_Os06g06630NANA6+3117179..3118435hypothetical protein
LOC_Os06g06640NANA6+3118930..3119280hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27473.1.S1_at--1114--2731Chr06:3093967..3093991 (25 bp)
AAGAACCATCCGGTTTGTGCCAGCA
LOC_Os06g06580
OsAffx.27473.1.S1_at--305--10831Chr06:3093981..3094005 (25 bp)
TTGTGCCAGCAGCTCCTAATGGGAC
LOC_Os06g06580
OsAffx.27473.1.S1_at--815--8011Chr06:3094087..3094111 (25 bp)
GGAGGCAACCCAGTACTGTGTTCAA
LOC_Os06g06580
OsAffx.27473.1.S1_at--911--2711Chr06:3094110..3094134 (25 bp)
AAGCAGGCCGGTACGGACGTCTTAT
LOC_Os06g06580
OsAffx.27473.1.S1_at--77--1891Chr06:3094126..3094150 (25 bp)
ACGTCTTATCCCTTTGACACATGAG
LOC_Os06g06580
OsAffx.27473.1.S1_at--947--691Chr06:3094146..3094170 (25 bp)
ATGAGCTTCCTCACAACACTGAGAC
LOC_Os06g06580
OsAffx.27473.1.S1_at--581--1431Chr06:3094668..3094692 (25 bp)
AGAACACAACTTTCTGCTCCTGAGT
LOC_Os06g06580
OsAffx.27473.1.S1_at--423--9271Chr06:3094685..3094709 (25 bp)
TCCTGAGTCCTTGGGAGAACATCGT
LOC_Os06g06580
OsAffx.27473.1.S1_at--238--5491Chr06:3094701..3094725 (25 bp)
GAACATCGTGTTGCTGACATTCAGA
LOC_Os06g06580
OsAffx.27473.1.S1_at--756--5671Chr06:3094716..3094740 (25 bp)
GACATTCAGACATCATACTCGCACC
LOC_Os06g06580
OsAffx.27473.1.S1_at--972--5231Chr06:3094884..3094908 (25 bp)
GAATACAATGAACTCTTAGCTGCAG
LOC_Os06g06580
Target Sequence 
AAGAACCATCCGGTTTGTGCCAGCAGCTCCTAATGGGACCATTGCCGAGGATTGGAGAACCTTTCAATTTACTGGAAGAT
CAGTTCAGCGGTTAAAGGAAGAGATTACAAGCCGTGCTGGGGAGGCAACCCAGTACTGTGTTCAAGCAGGCCGGTACGGA
CGTCTTATCCCTTTGACACATGAGCTTCCTCACAACACTGAGACCATTGATATCATCATTATGATGACTGGTACTACAGA
TNNNCNNNTNNNNAATAGCCCAAGAACACAACTTTCTGCTCCTGAGTCCTTGGGAGAACATCGTGTTGCTGACATTCAGA
CATCATACTCGCACCGTCTGCATACAAACAATGTACTTGAGAGTCAGCAACGGAAAACAGGTATAACACGAGCTGAACTT
GAATTGAAAACTAGGAATATCCACTGGGGAGATTTGAATTTGGAGGAAAAGAAGAGGACAAGAAAGGAGTTGAAAGCAGA
ATACAATGAACTCTTAGCTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27473.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis