Browse Element(s) Details


OsAffx.275.1.S1_at

Description gb:NM_195674.1
DB_XREF= gi:37532707
TID=OsAffx.275.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0004A10.9), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1753011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17489Os.9840.1.S1_at11/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17489OsAffx.22947.2.S1_x_at8/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17489OsAffx.22947.1.S1_x_at7/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17489OsAffx.22947.3.S1_x_at4/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17489OsAffx.22947.5.S1_x_at3/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17510OsAffx.8301.1.S1_at10/1110+8501056..8505354hAT family dimerisation domain containing protein, expressed
LOC_Os10g17520Os.49465.1.S1_at11/1110+8505763..8506811expressed protein
LOC_Os10g17530OsAffx.275.1.S1_at11/1110+8510782..8511997retrotransposon protein, putative, unclassified
LOC_Os10g17540NANA10+8518096..8520279retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g17560Os.27691.1.S1_x_at1/1110+8523289..8528995retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17570Os.45957.4.S1_x_at8/1110+8531688..8535374retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.275.1.S1_at--122--4451Chr10:8511728..8511752 (25 bp)
GCCTAGAGTCAGAAATCCACAATGT
LOC_Os10g17530
OsAffx.275.1.S1_at--1058--9191Chr10:8511713..8511737 (25 bp)
TCCACAATGTTGTCCCTATGGTATT
LOC_Os10g17530
OsAffx.275.1.S1_at--261--51Chr10:8511616..8511640 (25 bp)
ATTGATAATCGGCTGAAGCGCACTA
LOC_Os10g17530
OsAffx.275.1.S1_at--172--1371Chr10:8511576..8511600 (25 bp)
AGAGCAAAGTGGTGCCAGCCGATGA
LOC_Os10g17530
OsAffx.275.1.S1_at--288--7691Chr10:8511158..8511182 (25 bp)
GGGTACCCTACAAGCTATATTTATC
LOC_Os10g17530
OsAffx.275.1.S1_at--193--2431Chr10:8511123..8511147 (25 bp)
AAAACGATCGGCTCTGTGTTAATCC
LOC_Os10g17530
OsAffx.275.1.S1_at--15--6211Chr10:8510977..8511001 (25 bp)
GAGGCATTATCTACTTTCAAATGAG
LOC_Os10g17530
OsAffx.275.1.S1_at--507--691Chr10:8510957..8510981 (25 bp)
ATGAGTGCACAGTGGTTTGCAAAGC
LOC_Os10g17530
OsAffx.275.1.S1_at--802--7491Chr10:8510928..8510952 (25 bp)
GTGGTCAGGTACATGCTAACGGCTC
LOC_Os10g17530
OsAffx.275.1.S1_at--584--4831Chr10:8510914..8510938 (25 bp)
GCTAACGGCTCCTGTGTTGAAACGG
LOC_Os10g17530
OsAffx.275.1.S1_at--933--2571Chr10:8510815..8510839 (25 bp)
AACGGTAGCAGATTTCATTGTGGAA
LOC_Os10g17530
Target Sequence 
GCCTAGAGTCAGAAATCCACAATGTTGTCCCTATGGTATTTTTACAAAGAACAAGAAGAGACGAGTTCAAAGGATGAGAA
ATAGGGAGCAGATGCAGGAAATTGAAGAGGAGATTGATAATCGGCTGAAGCGCACTAAGGAGTGGTGGGTTAAGAGCAAA
GTGGTGCCAGCCGATGAGAAAGGGGTACCCTACAAGCTATATTTATCAACCGATGAAAAAACGATCGGCTCTGTGTTAAT
CCGAGAGATTGAAGGCAAGGAAAGAGCTATATTTTATCTAAGTAGAAGACTTTTGGATGCTGAGACAAGGTTGAGGCATT
ATCTACTTTCAAATGAGTGCACAGTGGTTTGCAAAGCCGATGTGGTCAGGTACATGCTAACGGCTCCTGTGTTGAAACGG
AGGATTGGAAAGTGGATTTTGGATTTGACGGAATTTGATCTAAGGTATGAATCAACTAAGGCGGTAAAAGGACAAACGGT
AGCAGATTTCATTGTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis