Browse Element(s) Details


OsAffx.27508.22.S1_s_at

Description gb:AK119442.1
DB_XREF= gi:37989065
TID=OsAffx.27508.22
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-133-C06, full insert sequence.
FL= gb:AK119442.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5223011/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52190Os.27799.1.S1_at11/114+30784767..30789016Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os04g52190OsAffx.24964.2.S1_s_at2/114+30784767..30789016Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os04g52200OsAffx.14374.1.S1_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52200OsAffx.14374.1.S1_x_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52200Os.36109.1.A1_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52210OsAffx.14375.1.S1_at11/114+30800291..30805182Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g52220OsAffx.26570.1.S1_at11/114+30805568..30805981hypothetical protein
LOC_Os04g52230OsAffx.27508.22.S1_s_at11/114+30808288..30812175Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g52240OsAffx.14376.1.S1_at11/114+30815974..30824354Terpene synthase family, metal binding domain containing protein
LOC_Os04g52250Os.38235.1.S1_x_at1/114+30832100..30832969transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g52250Os.38235.2.S1_x_at1/114+30832100..30832969transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0016099biological_processmonoterpenoid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0009899molecular_functionent-kaurene synthase activity
GO:0009905molecular_functionent-copalyl diphosphate synthase activity
GO:0042408molecular_functionmyrcene/(E)-beta-ocimene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27508.22.S1_s_at--895--7571Chr04:30811315..30811339 (25 bp)
GGGCGTCTCCTGAATGACAGCCAAG
LOC_Os04g52230
OsAffx.27508.22.S1_s_at--593--1111Chr04:30811647..30811671 (25 bp)
AGTGTCTCACTGCTTGTTCATCACA
LOC_Os04g52230
OsAffx.27508.22.S1_s_at--202--391Chr04:30811666..30811690 (25 bp)
ATCACAGTGGTGGTTCTATCTCCAT
LOC_Os04g52230
OsAffx.27508.22.S1_s_at--899--5551Chr04:30811706..30811730 (25 bp)
GAAAGCCCAGAAATCCATAGACACT
LOC_Os04g52230
OsAffx.27508.22.S1_s_at--920--2491Chr04:30811765..30811789 (25 bp)
AACAGGGTGCTGTTCCTAGGCCATG
LOC_Os04g52230
OsAffx.27508.22.S1_s_at--753--10671Chr04:30811777..30811801 (25 bp)
TTCCTAGGCCATGCAAGCAGCTGTT
LOC_Os04g52230
OsAffx.27508.22.S1_s_at--523--51Chr04:30811818..30811842 (25 bp)
ATTGTTCACATGTTCTACTCTCGGA
LOC_Os04g52230
OsAffx.27508.22.S1_s_at--995--10571Chr04:30811830..30811854 (25 bp)
TTCTACTCTCGGACTGATGGGTTTA
LOC_Os04g52230
OsAffx.27508.22.S1_s_at--441--5731Chr04:30811841..30811865 (25 bp)
GACTGATGGGTTTAGCTCGCCGAAG
LOC_Os04g52230
OsAffx.27508.22.S1_s_at--159--10831Chr04:30811941..30811965 (25 bp)
TTGTCGGGCAATTGAGTGCTTCTCC
LOC_Os04g52230
OsAffx.27508.22.S1_s_at--250--7331Chr04:30811956..30811980 (25 bp)
GTGCTTCTCCGTTCTGTTTTATCAG
LOC_Os04g52230
Target Sequence 
GGGCGTCTCCTGAATGACAGCCAAGGCTTTGAGAGGGAGAGCCTGGAGGGAAAGCTGAACAGTGTCTCACTGCTTGTTCA
TCACAGTGGTGGTTCTATCTCCATAGACGAGGCTAAAATGAAAGCCCAGAAATCCATAGACACTTCCAGGAGGAACTTGT
TAAGATTGGTCCTTGGAGAACAGGGTGCTGTTCCTAGGCCATGCAAGCAGCTGTTCTGGAAGATGTGCAAGATTGTTCAC
ATGTTCTACTCTCGGACTGATGGGTTTAGCTCGCCGAAGGAAATGGTTAGTGCAGTGAATGCAGTCGTCAAGGAGCCACT
TAAACTCAAAGTGAGTGATCCATATGGCTCTATTTTGTCGGGCAATTGAGTGCTTCTCCGTTCTGTTTTATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27508.22.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis