Browse Element(s) Details


OsAffx.27514.1.S1_at

Description tigr:9634.m00809
TID=OsAffx.27514.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0865011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08620Os.55265.1.S1_at9/116+4287385..4287951hypothetical protein
LOC_Os06g08630OsAffx.19542.3.S1_x_at10/116+4289192..4293413retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g08640OsAffx.27513.1.S1_s_at11/116+4300561..4302106Transferase family protein, expressed
LOC_Os06g08650OsAffx.27514.1.S1_at11/116+4312313..4314334pentatricopeptide, putative, expressed
LOC_Os06g08660Os.50316.1.S1_s_at11/116+4314724..4318250pentatricopeptide, putative, expressed
LOC_Os06g08660Os.50316.1.S1_at11/116+4314724..4318250pentatricopeptide, putative, expressed
LOC_Os06g08670Os.7552.1.S1_at11/116+4320684..4324284Phospholipid hydroperoxide glutathione peroxidase, chloroplast precursor, putative, expressed
LOC_Os06g08670OsAffx.15315.1.S1_at11/116+4320684..4324284Phospholipid hydroperoxide glutathione peroxidase, chloroplast precursor, putative, expressed
LOC_Os06g08680Os.49907.1.S1_at11/116+4328667..4329598expressed protein
LOC_Os06g08690OsAffx.27515.1.S1_at11/116+4330517..4333807Leucine Rich Repeat family protein, expressed
LOC_Os06g08690OsAffx.27515.1.S1_x_at11/116+4330517..4333807Leucine Rich Repeat family protein, expressed
LOC_Os06g08700OsAffx.26548.1.S1_at3/116+4335267..4335824retrotransposon protein, putative, unclassified
LOC_Os06g08710OsAffx.27515.2.S1_at11/116+4338308..4341792Leucine Rich Repeat family protein, expressed
LOC_Os06g08710OsAffx.27515.1.S1_x_at3/116+4338308..4341792Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27514.1.S1_at--555--8851Chr06:4313734..4313758 (25 bp)
TGATCTCCCATCTGCTCAGAGGGTT
LOC_Os06g08650
OsAffx.27514.1.S1_at--365--4031Chr06:4313777..4313801 (25 bp)
CGTAATTCTGTCACTTGGTCTGCAA
LOC_Os06g08650
OsAffx.27514.1.S1_at--1153--1611Chr06:4313833..4313857 (25 bp)
AGCTGGTTCTATCGATCTTTTCAAT
LOC_Os06g08650
OsAffx.27514.1.S1_at--885--7411Chr06:4313894..4313918 (25 bp)
GTGTTCACAAGCATACTTTCCGCTT
LOC_Os06g08650
OsAffx.27514.1.S1_at--1063--10291Chr06:4313910..4313934 (25 bp)
TTTCCGCTTGCAGCCATACTGGAAT
LOC_Os06g08650
OsAffx.27514.1.S1_at--47--8511Chr06:4313967..4313991 (25 bp)
TGGCACGACATTTTAACATCACCCC
LOC_Os06g08650
OsAffx.27514.1.S1_at--874--10091Chr06:4314013..4314037 (25 bp)
TATGGTTGATGTGATGGCCCGTGCC
LOC_Os06g08650
OsAffx.27514.1.S1_at--370--7651Chr06:4314103..4314127 (25 bp)
GGGATCCTTTCTCCATGGGTGCAAG
LOC_Os06g08650
OsAffx.27514.1.S1_at--739--9011Chr06:4314122..4314146 (25 bp)
TGCAAGCTACATTCCAGGTTAGAGT
LOC_Os06g08650
OsAffx.27514.1.S1_at--878--5351Chr06:4314166..4314190 (25 bp)
GAAGATGGCAGCACTTCATCCTGAA
LOC_Os06g08650
OsAffx.27514.1.S1_at--753--8871Chr06:4314210..4314234 (25 bp)
TGATGTCCAACTTGTACACCTCGTA
LOC_Os06g08650
Target Sequence 
TGATCTCCCATCTGCTCAGAGGGTTTTCAATGATATGACTGACCGTAATTCTGTCACTTGGTCTGCAATGATTGGCGGTT
ATGGCATGCAGGGTGATTCAGCTGGTTCTATCGATCTTTTCAATGAAATGCTGAAAGAAAATATCCACCCGAATGAAGTA
GTGTTCACAAGCATACTTTCCGCTTGCAGCCATACTGGAATGGTTACTGCAGGAAAGGAGTATTTTGATAGCATGGCACG
ACATTTTAACATCACCCCTTCCATGAAGCACTATGCATGTATGGTTGATGTGATGGCCCGTGCCGGAAATCTGGAGGAAG
CATTGGAGTTCATACAGAATATGCCAATCAAAGCAGGAATTAGTGTCTGGGGATCCTTTCTCCATGGGTGCAAGCTACAT
TCCAGGTTAGAGTTTGGAGAAGAAGCCATCAAGAAGATGGCAGCACTTCATCCTGAAACACCAGATTTTTATGTGCTGAT
GTCCAACTTGTACACCTCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27514.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis