Browse Element(s) Details


OsAffx.2760.1.S1_at

Description tigr:9630.m02494
TID=OsAffx.2760.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2647011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26420NANA2+15510255..15513417retrotransposon protein, putative, unclassified
LOC_Os02g26430Os.56922.1.S1_at11/112+15515627..15516852WRKY DNA binding domain containing protein, expressed
LOC_Os02g26440Os.39418.1.S1_s_at10/112+15518426..15521844prefoldin-related KE2 family protein, putative, expressed
LOC_Os02g26440OsAffx.12203.1.S1_at10/112+15518426..15521844prefoldin-related KE2 family protein, putative, expressed
LOC_Os02g26440Os.39418.1.S1_at4/112+15518426..15521844prefoldin-related KE2 family protein, putative, expressed
LOC_Os02g26450OsAffx.12204.1.S1_at11/112+15523769..15526038transposon protein, putative, unclassified
LOC_Os02g26460OsAffx.12205.1.S1_at11/112+15527268..15527984hAT dimerisation domain-containing protein, putative
LOC_Os02g26460OsAffx.15672.1.S1_x_at1/112+15527268..15527984hAT dimerisation domain-containing protein, putative
LOC_Os02g26470OsAffx.2760.1.S1_at11/112+15537844..15538277expressed protein
LOC_Os02g26480Os.49460.1.S1_at10/112+15543448..15552430Serine carboxypeptidase I precursor, putative, expressed
LOC_Os02g26490OsAffx.20858.5.S1_x_at8/112+15552665..15555486hypothetical protein
LOC_Os02g26490OsAffx.20858.1.S1_x_at6/112+15552665..15555486hypothetical protein
LOC_Os02g26490OsAffx.20858.4.S1_x_at4/112+15552665..15555486hypothetical protein
LOC_Os02g26500Os.11575.4.S1_x_at4/112+15556364..15560053transposon protein, putative, Pong sub-class
LOC_Os02g26500Os.11575.3.S1_x_at1/112+15556364..15560053transposon protein, putative, Pong sub-class
LOC_Os02g26510OsAffx.24433.1.S1_at11/112+15560201..15562653hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2760.1.S1_at--526--5391Chr02:15538128..15538152 (25 bp)
GAAGCAGAGGCAGCGATCTTGCGAC
LOC_Os02g26470
OsAffx.2760.1.S1_at--849--1511Chr02:15538126..15538150 (25 bp)
AGCAGAGGCAGCGATCTTGCGACGA
LOC_Os02g26470
OsAffx.2760.1.S1_at--987--5031Chr02:15538125..15538149 (25 bp)
GCAGAGGCAGCGATCTTGCGACGAC
LOC_Os02g26470
OsAffx.2760.1.S1_at--955--1631Chr02:15538117..15538141 (25 bp)
AGCGATCTTGCGACGACAGCCAACT
LOC_Os02g26470
OsAffx.2760.1.S1_at--602--4631Chr02:15538116..15538140 (25 bp)
GCGATCTTGCGACGACAGCCAACTG
LOC_Os02g26470
OsAffx.2760.1.S1_at--285--6431Chr02:15538114..15538138 (25 bp)
GATCTTGCGACGACAGCCAACTGCC
LOC_Os02g26470
OsAffx.2760.1.S1_at--634--9571Chr02:15538112..15538136 (25 bp)
TCTTGCGACGACAGCCAACTGCCTG
LOC_Os02g26470
OsAffx.2760.1.S1_at--768--9151Chr02:15538109..15538133 (25 bp)
TGCGACGACAGCCAACTGCCTGCTT
LOC_Os02g26470
OsAffx.2760.1.S1_at--501--5791Chr02:15538106..15538130 (25 bp)
GACGACAGCCAACTGCCTGCTTCTT
LOC_Os02g26470
OsAffx.2760.1.S1_at--688--6131Chr02:15538001..15538025 (25 bp)
GAGGGCTCGTCGGACATCCTGGCCT
LOC_Os02g26470
OsAffx.2760.1.S1_at--481--8311Chr02:15537998..15538022 (25 bp)
GGCTCGTCGGACATCCTGGCCTTCG
LOC_Os02g26470
Target Sequence 
GAAGCAGAGGCAGCGATCTTGCGACGACAGCCAACTGCCTGCTTCTTCCCTCAACCCGACGGCGGCGAGGCTGCTCCGGG
AGGCCATCGTGTCCGCGCCGGCGGGCGGCGGCGAGAAGACGGCCGCCGAGGGCTCGTCGGACATCCTGGCCTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis