Browse Element(s) Details


OsAffx.27750.1.S1_x_at

Description tigr:9634.m02090
TID=OsAffx.27750.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3487011/11hypothetical protein
LOC_Os06g213504/11hypothetical protein
LOC_Os10g049802/11F-box domain containing protein, expressed
LOC_Os10g049501/11hypothetical protein
LOC_Os11g113301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34854Os.27439.1.S1_at11/115+20602162..20608934Gibberellin 20 oxidase 2, putative, expressed
LOC_Os05g34854Os.27439.2.S1_at10/115+20602162..20608934Gibberellin 20 oxidase 2, putative, expressed
LOC_Os05g34854Os.26961.1.A1_at9/115+20602162..20608934Gibberellin 20 oxidase 2, putative, expressed
LOC_Os05g34870OsAffx.27750.1.S1_at11/115+20626635..20630073hypothetical protein
LOC_Os05g34870OsAffx.27750.1.S1_x_at11/115+20626635..20630073hypothetical protein
LOC_Os05g34870Os.36607.2.S1_x_at4/115+20626635..20630073hypothetical protein
LOC_Os05g34870Os.36607.2.S1_at3/115+20626635..20630073hypothetical protein
LOC_Os05g34870Os.46853.2.S1_x_at1/115+20626635..20630073hypothetical protein
LOC_Os05g34880Os.49843.1.S1_at10/115+20638308..20642853Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g34890OsAffx.27168.1.S1_at11/115+20643325..20644127hypothetical protein
LOC_Os05g34900Os.27470.1.S1_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34900Os.27470.3.A1_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34900Os.27470.2.S1_a_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34910Os.54914.1.S1_at1/115+20653165..20653807hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27750.1.S1_x_at--556--8831Chr05:20629436..20629499 (25 bp)
TGATCAGTCGCGAGCTGAGATGCTG
LOC_Os05g34870
OsAffx.27750.1.S1_x_at--283--4751Chr05:20629488..20629512 (25 bp)
GCTGAGATGCTGTTACAAGGCCAAC
LOC_Os05g34870
OsAffx.27750.1.S1_x_at--69--6331Chr05:20629493..20629517 (25 bp)
GATGCTGTTACAAGGCCAACGTGGA
LOC_Os05g34870
OsAffx.27750.1.S1_x_at--833--8531Chr05:20629514..20629538 (25 bp)
TGGACGGCTTCAGCGCAACGGACTT
LOC_Os05g34870
OsAffx.27750.1.S1_x_at--761--2571Chr05:20629530..20629554 (25 bp)
AACGGACTTCCACCATCATTGGTTG
LOC_Os05g34870
OsAffx.27750.1.S1_x_at--843--2051Chr05:20629535..20629559 (25 bp)
ACTTCCACCATCATTGGTTGCACGA
LOC_Os05g34870
OsAffx.27750.1.S1_x_at--784--411Chr05:20629544..20629568 (25 bp)
ATCATTGGTTGCACGACCACCGCCG
LOC_Os05g34870
OsAffx.27750.1.S1_x_at--1155--1493Chr05:20629627..20629651 (25 bp)
AGCACGGACGACTACTACGACACGC
LOC_Os05g34870
OsAffx.27750.1.S1_x_at--839--8094Chr05:20629632..20629656 (25 bp)
GGACGACTACTACGACACGCTCGAC
LOC_Os05g34870
OsAffx.27750.1.S1_x_at--1077--3635Chr05:20629915..20629939 (25 bp)
CTTCATCTACAACTCGGCGACGTTC
LOC_Os05g34870
OsAffx.27750.1.S1_x_at--696--9834Chr05:20629922..20629946 (25 bp)
TACAACTCGGCGACGTTCCGGTGGA
LOC_Os05g34870
Target Sequence 
TGATCAGTCGCGAGCTGAGATGCTGTTACAAGGCCAACGTGGACGGCTTCAGCGCAACGGACTTCCACCATCATTGGTTG
CACGACCACCGCCGCTGCCGCCGGCGGGGTCATGCCGTCATGTTCGGNNGGTTCAGCCNACAGGGGTACCGAAGCACGGA
CGACTACTACGACACGCTCGACGCCTTCCTCTTCTACTGGCCGGACACGGACACGGACGCCGCAGCGACGGCGGNGGTGG
TGCTGCCAAAGGTGGGCGGGAGCGGGNCGNCGCTGTTCNANTACGCGCGGGCCGCAGTTCGGCGNCGANGGGCTGCTCAT
NGGGCCGCCGCTGANCGCCGTGATGNGGNTGTTCACGGGGCCCGACTCCAGCNCCGGNGNCGGNGACCTCCGNAGCACGC
GGTCGCGTTTCNGGCTGTCGTACNCGAAGNGCTCCACCGTCTTCATCTACAACTCGGCGACGTTCCGGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27750.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis