Browse Element(s) Details


OsAffx.27781.1.S1_at

Description tigr:9634.m02278
TID=OsAffx.27781.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=amine oxidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2314011/11Copper amine oxidase, enzyme domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23114Os.52128.1.S1_at11/116+13475515..13484052Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os06g23114Os.52460.1.S1_at11/116+13475515..13484052Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os06g23114OsAffx.16614.1.S1_x_at1/116+13475515..13484052Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os06g23130OsAffx.15573.1.S1_at5/116+13487228..13489948hypothetical protein
LOC_Os06g23140OsAffx.27781.1.S1_at11/116+13497673..13500215Copper amine oxidase, enzyme domain containing protein
LOC_Os06g23150OsAffx.27782.1.S1_at11/116+13509345..13509756hypothetical protein
LOC_Os06g23160Os.17321.1.S1_at11/116+13513671..13520720Nucleotidyl transferase family protein, expressed
LOC_Os06g23160OsAffx.17544.1.S1_at1/116+13513671..13520720Nucleotidyl transferase family protein, expressed
LOC_Os06g23170OsAffx.23712.1.S1_at2/116+13523541..13531870retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g23170OsAffx.242.1.S1_at1/116+13523541..13531870retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0005507molecular_functioncopper ion binding
GO:0008131molecular_functionamine oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27781.1.S1_at--1138--1211Chr06:13499600..13499624 (25 bp)
AGTTCAAAACCGTTGGCTCCATCAA
LOC_Os06g23140
OsAffx.27781.1.S1_at--420--351Chr06:13499620..13499733 (25 bp)
ATCAAGACCGTGGTGTCCCTTAGTG
LOC_Os06g23140
OsAffx.27781.1.S1_at--439--7451Chr06:13499721..13499745 (25 bp)
GTGTCCCTTAGTGGTATCTTGGAGA
LOC_Os06g23140
OsAffx.27781.1.S1_at--1158--8991Chr06:13499746..13499770 (25 bp)
TGAAGGCGACGAATTACACACATGT
LOC_Os06g23140
OsAffx.27781.1.S1_at--1117--9851Chr06:13499760..13499784 (25 bp)
TACACACATGTCGACCAGATTAGAG
LOC_Os06g23140
OsAffx.27781.1.S1_at--924--6311Chr06:13499784..13499808 (25 bp)
GATGACATACATGGCACGCTGATTG
LOC_Os06g23140
OsAffx.27781.1.S1_at--912--6971Chr06:13499973..13499997 (25 bp)
GTACTCTATGAGGTGGCCGAAACTG
LOC_Os06g23140
OsAffx.27781.1.S1_at--623--2071Chr06:13500016..13500040 (25 bp)
ACATTAATGGCGCACCTGCTGATCT
LOC_Os06g23140
OsAffx.27781.1.S1_at--804--451Chr06:13500037..13500061 (25 bp)
ATCTCCTCTTCGTTAACCCAAGCAA
LOC_Os06g23140
OsAffx.27781.1.S1_at--1035--4251Chr06:13500106..13500130 (25 bp)
CCGGTGCGACGGCAACATCATTGTT
LOC_Os06g23140
OsAffx.27781.1.S1_at--491--2151Chr06:13500149..13500173 (25 bp)
ACAGCGCCGAGCAAGCTACACTAAG
LOC_Os06g23140
Target Sequence 
AGTTCAAAACCGTTGGCTCCATCAAGACCGTGGTGTCCCTTAGTGGTATCTTGGAGATGAAGGCGACGAATTACACACAT
GTCGACCAGATTAGAGATGACATACATGGCACGCTGATTGCCGAGAACACCGTCGGTGTCTACCATGACCACTTCATTAC
CTACCACCTTGACCTTGACATTGATGGTACCAAGAACTCTTTCATCAAAAATACCATCATTCCAAAACGCAACACGGGCG
TTCGTGCAACCGGCGGTGCTCCCACACCAAGGAGCTACTGGACGGTACTCTATGAGGTGGCCGAAACTGAGGCTGAAGGC
CAGGTGAACATTAATGGCGCACCTGCTGATCTCCTCTTCGTTAACCCAAGCAAGAAGACAAAAGTTGGCAATGAGGTCGG
TTACCGGCTCATTCCAGCCGGTGCGACGGCAACATCATTGTTGGCCAACAACGACTACCCACAGCGCCGAGCAAGCTACA
CTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27781.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis