Browse Element(s) Details


OsAffx.27787.1.S1_at

Description tigr:9634.m02306
TID=OsAffx.27787.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2341010/11hypothetical protein
LOC_Os08g366801/11Eukaryotic-type carbonic anhydrase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23380OsAffx.27785.1.S1_at11/116+13646635..13647353IQ calmodulin-binding motif family protein
LOC_Os06g23390OsAffx.27786.1.S1_at9/116+13648911..13651230IQ calmodulin-binding motif family protein
LOC_Os06g23400OsAffx.4915.1.S1_at11/116+13663130..13663813hypothetical protein
LOC_Os06g23410OsAffx.27787.1.S1_at10/116+13668057..13670847hypothetical protein
LOC_Os06g23420Os.54057.1.S1_at11/116+13673055..13675419Exostosin family protein, expressed
LOC_Os06g23430Os.1315.1.S1_at11/116+13676509..13680874Signal recognition particle 19 kDa protein, putative, expressed
LOC_Os06g23440Os.4711.1.S1_at11/116+13684423..13685178Eukaryotic translation initiation factor 1A, putative, expressed
LOC_Os06g23440Os.57496.1.S1_x_at11/116+13684423..13685178Eukaryotic translation initiation factor 1A, putative, expressed
LOC_Os06g23450OsAffx.4916.1.S1_at10/116+13686769..13687747retrotransposon protein, putative, unclassified
LOC_Os06g23460OsAffx.27788.1.S1_at11/116+13689562..13696927KH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006730biological_processone-carbon compound metabolism
GO:0004089molecular_functioncarbonate dehydratase activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27787.1.S1_at--311--7331Chr06:13668103..13668127 (25 bp)
GTGCACTCAAGCGATGGCGGTTCGA
LOC_Os06g23410
OsAffx.27787.1.S1_at--791--871Chr06:13668153..13668177 (25 bp)
ATGGCCGCCTGCTGTGATGATAGTT
LOC_Os06g23410
OsAffx.27787.1.S1_at--175--6031Chr06:13668368..13668392 (25 bp)
GAGATGACTAGTACAAACCCGGAGA
LOC_Os06g23410
OsAffx.27787.1.S1_at--557--2611Chr06:13668383..13668407 (25 bp)
AACCCGGAGAACACTCTAGATCCAG
LOC_Os06g23410
OsAffx.27787.1.S1_at--1024--9071Chr06:13668490..13668514 (25 bp)
TGCTCCTGGTACTGGTCAACATGTT
LOC_Os06g23410
OsAffx.27787.1.S1_at--1000--3311Chr06:13668560..13668584 (25 bp)
GCAAAGAACGTGCTCCCCAAAAACT
LOC_Os06g23410
OsAffx.27787.1.S1_at--985--6371Chr06:13668586..13668610 (25 bp)
GATCGCCTACCTACCAATGCAGTTA
LOC_Os06g23410
OsAffx.27787.1.S1_at--210--5031Chr06:13668604..13668628 (25 bp)
GCAGTTACTCAGGTGGATGGTGTTC
LOC_Os06g23410
OsAffx.27787.1.S1_at--843--8271Chr06:13668633..13668657 (25 bp)
GGCATGCTCGTCCTAAGTACCCGTG
LOC_Os06g23410
OsAffx.27787.1.S1_at--1064--2832Chr06:13668647..13668963 (25 bp)
AAGTACCCGTGCGTGCAGGTTAACA
LOC_Os06g23410
OsAffx.27787.1.S1_at--840--5011Chr11:9896050..9896069 (20 bp)
GCAGGTTAACATCTCTGCTTTAAGA
NONE
Target Sequence 
GTGCACTCAAGCGATGGCGGTTCGAACAAGGGGCTGTGATGGAATGGGACATGGCCGCCTGCTGTGATGATAGTTGCAGT
TCTAACATAGTGATAAACATGAATATGCTACCAGAAATAATAGCATCTAACAACATATTTAACACTGCTGAGATGACTAG
TACAAACCCGGAGAACACTCTAGATCCAGAGGCAATGGTGTTGGTGTTGTCGCCATCGTTGTCGTTGTCGCTCCCTTCTC
CTCTGTTGCCGATGCTCTCCTCCAATGCCGCTGCTCCTGGTACTGGTCAACATGTTGCAAAGGGTTGTCGATGTAGAGGA
AGCAATGTTGAGAGCATTCACGCAAAGAACGTGCTCCCCAAAAACTTGATCGCCTACCTACCAATGCAGTTACTCAGGTG
GATGGTGTTCCAGGGGCATGCTCGTCCTAAGTACCCGTGCGTGCAGGTTAACATCTCTGCTTTAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis