Browse Element(s) Details


OsAffx.27819.1.S1_x_at

Description tigr:9634.m02510
TID=OsAffx.27819.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g402504/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g253404/11hypothetical protein
LOC_Os06g252901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g213791/11
LOC_Os06g253201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g253801/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40220OsAffx.28020.1.S1_at10/116+23955154..23957721F-box domain containing protein
LOC_Os06g40230OsAffx.15857.1.S1_at11/116+23962771..23965178hypothetical protein
LOC_Os06g40240OsAffx.20387.1.S1_x_at2/116+23967212..23975390retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40240OsAffx.1216.1.S1_at1/116+23967212..23975390retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40250OsAffx.27819.1.S1_x_at4/116+23976459..23979013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40250OsAffx.27819.1.S1_at4/116+23976459..23979013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40250Os.47371.1.S1_at1/116+23976459..23979013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40250Os.45173.1.S1_x_at1/116+23976459..23979013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40260OsAffx.31869.5.S1_x_at1/116+23979278..23983699retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40270Os.45173.1.S1_x_at1/116+23984808..23989178retrotransposon protein, putative, unclassified
LOC_Os06g40280OsAffx.7527.1.S1_x_at2/116+23989809..23992668retrotransposon protein, putative, unclassified
LOC_Os06g40280Os.25754.2.S1_x_at1/116+23989809..23992668retrotransposon protein, putative, unclassified
LOC_Os06g40280Os.53479.1.S1_x_at1/116+23989809..23992668retrotransposon protein, putative, unclassified
LOC_Os06g40290OsAffx.15858.1.S1_at11/116+23993611..23994355hypothetical protein
LOC_Os06g40300NANA6+23994715..23995490transposon protein, putative, unclassified
LOC_Os06g40310OsAffx.22896.1.S1_x_at1/116+23996654..23998642transposon protein, putative, unclassified
LOC_Os06g40320OsAffx.28021.1.S1_at11/116+24000342..24002191hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27819.1.S1_x_at--1121--9331Chr06:14843901..14843925 (25 bp)
TCGCGCCGCTGCGAGTAGCGTGGTG
LOC_Os06g25340
OsAffx.27819.1.S1_x_at--117--4531Chr06:14843897..14843921 (25 bp)
GCCGCTGCGAGTAGCGTGGTGGAGT
LOC_Os06g25340
OsAffx.27819.1.S1_x_at--965--4771Chr06:14843894..14843918 (25 bp)
GCTGCGAGTAGCGTGGTGGAGTTCC
LOC_Os06g25340
OsAffx.27819.1.S1_x_at--562--7511NONE
GTGGAGTTCCACGAGATTCCGACGT
NONE
OsAffx.27819.1.S1_x_at--137--8551NONE
TGGAGTTCCACGAGATTCCGACGTT
NONE
OsAffx.27819.1.S1_x_at--799--7911NONE
GGAGTTCCACGAGATTCCGACGTTC
NONE
OsAffx.27819.1.S1_x_at--418--66933Chr12:11447453..11447477 (25 bp)
GTTCCCGGAGAGTCCGATTTTGCAG
NONE
OsAffx.27819.1.S1_x_at--810--4372Chr06:23976912..23977015 (25 bp)
CCAAGGCCAGCAAGGTACAGTGGTA
LOC_Os06g40250
OsAffx.27819.1.S1_x_at--311--3212Chr06:23976913..23977016 (25 bp)
CAAGGCCAGCAAGGTACAGTGGTAC
LOC_Os06g40250
OsAffx.27819.1.S1_x_at--678--2953Chr08:14485652..14486008 (25 bp)
AAGGCCAGCAAGGTACAGTGGTACA
NONE
OsAffx.27819.1.S1_x_at--1114--874Chr08:14485653..14486009 (25 bp)
AGGCCAGCAAGGTACAGTGGTACAC
NONE
Target Sequence 
TCGCGCCGCTGCGAGTAGCGTGGTGGAGTTCCACGAGATTCCGACGTTCCCGGAGAGTCCGATTTTGCAGGAGAAGAATT
TGAAGAGTTCCAAGGCCAGCAAGGTACAGTGGTACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27819.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis