Browse Element(s) Details

OsAffx.27823.2.S1_at

Description

tigr:9634.m02532
TID=OsAffx.27823.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g25540	11/11	hypothetical protein
LOC_Os12g20280	6/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g25500	OsAffx.4936.1.S1_at	10/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.50255.1.S1_at	6/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.27790.2.A1_x_at	4/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	OsAffx.20354.1.S1_at	2/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.26561.1.S1_at	2/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.46995.1.S1_x_at	1/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.49405.2.S1_x_at	1/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25510	NA	NA	6	+	14917278..14917625	hypothetical protein
LOC_Os06g25520	OsAffx.26476.3.S1_at	10/11	6	+	14921637..14925142	hypothetical protein
LOC_Os06g25520	Os.41248.5.S1_x_at	5/11	6	+	14921637..14925142	hypothetical protein
LOC_Os06g25520	Os.41248.2.A1_at	4/11	6	+	14921637..14925142	hypothetical protein
LOC_Os06g25520	Os.23964.2.S1_x_at	1/11	6	+	14921637..14925142	hypothetical protein
LOC_Os06g25530	OsAffx.27822.1.S1_x_at	11/11	6	+	14929151..14931307	expressed protein
LOC_Os06g25530	OsAffx.27822.1.S1_at	10/11	6	+	14929151..14931307	expressed protein
LOC_Os06g25540	OsAffx.27823.2.S1_at	11/11	6	+	14932982..14936275	hypothetical protein
LOC_Os06g25550	OsAffx.27823.1.S1_at	2/11	6	+	14936393..14940601	retrotransposon protein, putative, unclassified
LOC_Os06g25560	NA	NA	6	+	14942017..14942616	Zinc knuckle family protein
LOC_Os06g25570	OsAffx.15611.1.S1_at	11/11	6	+	14945394..14948087	hypothetical protein
LOC_Os06g25570	OsAffx.17848.1.S1_at	1/11	6	+	14945394..14948087	hypothetical protein
LOC_Os06g25570	OsAffx.17848.1.S1_x_at	1/11	6	+	14945394..14948087	hypothetical protein
LOC_Os06g25570	OsAffx.17848.2.S1_x_at	1/11	6	+	14945394..14948087	hypothetical protein
LOC_Os06g25570	OsAffx.17848.5.S1_x_at	1/11	6	+	14945394..14948087	hypothetical protein
LOC_Os06g25580	Os.35344.18.S1_x_at	11/11	6	+	14958946..14964967	Transposable element protein, putative, MuDR
LOC_Os06g25580	Os.35344.3.S1_x_at	9/11	6	+	14958946..14964967	Transposable element protein, putative, MuDR
LOC_Os06g25580	OsAffx.22940.5.S1_x_at	3/11	6	+	14958946..14964967	Transposable element protein, putative, MuDR

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27823.2.S1_at--888--865	2	Chr12:11841704..11841727 (24 bp)	TGTGGCAGTGCCACTCAACATTGCC	LOC_Os12g20280
OsAffx.27823.2.S1_at--55--971	2	Chr12:11841717..11841741 (25 bp)	TCAACATTGCCCCTGAGATGCTAGG	LOC_Os12g20280
OsAffx.27823.2.S1_at--6--961	2	Chr12:11841744..11841768 (25 bp)	TAGTGTCTCCCAAGAATTCCCTAAG	LOC_Os12g20280
OsAffx.27823.2.S1_at--389--713	2	Chr12:11841748..11841772 (25 bp)	GTCTCCCAAGAATTCCCTAAGCATA	LOC_Os12g20280
OsAffx.27823.2.S1_at--105--1021	2	Chr12:11841771..11841795 (25 bp)	TATTAGGGGCTGCACCTTCAATGTC	LOC_Os12g20280
OsAffx.27823.2.S1_at--170--1051	2	Chr12:11841787..11841811 (25 bp)	TTCAATGTCCACAGCAGCGGCACCA	LOC_Os12g20280
OsAffx.27823.2.S1_at--66--289	1	Chr06:14936011..14936035 (25 bp)	AAGGGCATCCCGGTGCAAGGCAAAG	LOC_Os06g25540
OsAffx.27823.2.S1_at--320--759	1	Chr06:14936013..14936037 (25 bp)	GGGCATCCCGGTGCAAGGCAAAGAA	LOC_Os06g25540
OsAffx.27823.2.S1_at--413--937	1	Chr06:14936132..14936156 (25 bp)	TCGACTGGTACTCCCACTCAATGTC	LOC_Os06g25540
OsAffx.27823.2.S1_at--634--175	1	Chr06:14936190..14936214 (25 bp)	ACCGATGTCGGCGATGCAATGCTCA	LOC_Os06g25540
OsAffx.27823.2.S1_at--748--405	1	Chr06:14936201..14936225 (25 bp)	CGATGCAATGCTCATCGCACTTGGG	LOC_Os06g25540

Target Sequence

TGTGGCAGTGCCACTCAACATTGCCCCTGAGATGCTAGGGGTAGTGTCTCCCAAGAATTCCCTAAGCATATTAGGGGCTG
CACCTTCAATGTCCACAGCAGCGGCACCATCATCTGCATCAACAGGTGGCGCGCTGAACCGCCCTCACCGCCTGCACCCA
CTTGATAAAGGGAAGGTTGTGATGGAGGATGAAACGCACCATGAGCTGCCCTCAAGCAAGAAGAAGGGTGTAGTGGTTCT
GCAAAGTGTCCCTACACAACAGCAAAGCTCGTCGCCGTCATCAAGCAAGCTCCGAGCTGATGCCCCAGAGTTCATCCCAT
CATCAATCAAAAAATCAAGGGCATCCCGGTGCAAGGCAAAGAAGAAGCGTACGCTCCAATGGGAAGGAGTGTACGTTTCA
CTTGGTGACGTCAGGATGGGTCATGTCGACCCAACCGTGGTGCCTTCTGACACGGTATCGACTGGTACTCCCACTCAATG
TCCTTCCATGCAAGGATCTTTTTCACCATCCAAGAACCGATGTCGGCGATGCAATGCTCATCGCACTTGGG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis