Browse Element(s) Details

OsAffx.27937.2.S1_s_at

Description

tigr:9634.m03248
TID=OsAffx.27937.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g34570	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g34510	NA	NA	6	+	20080452..20083772	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34520	OsAffx.27929.1.S1_at	11/11	6	+	20084774..20085595	CAF1 family ribonuclease containing protein
LOC_Os06g34530	NA	NA	6	+	20087573..20088145	Zinc finger, C3HC4 type family protein
LOC_Os06g34540	NA	NA	6	+	20092407..20093057	hypothetical protein
LOC_Os06g34550	OsAffx.27931.2.S1_at	11/11	6	+	20093445..20093960	hypothetical protein
LOC_Os06g34550	OsAffx.27931.2.S1_x_at	11/11	6	+	20093445..20093960	hypothetical protein
LOC_Os06g34560	OsAffx.27942.1.S1_at	10/11	6	+	20097737..20099499	Zinc finger, C3HC4 type family protein
LOC_Os06g34564	OsAffx.20927.1.S1_x_at	9/11	6	+	20101691..20103442	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564	OsAffx.20927.1.S1_at	8/11	6	+	20101691..20103442	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564	OsAffx.17778.2.S1_at	2/11	6	+	20101691..20103442	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564	OsAffx.29316.1.S1_x_at	1/11	6	+	20101691..20103442	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564	OsAffx.14776.1.S1_x_at	1/11	6	+	20101691..20103442	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564	OsAffx.6537.1.S1_at	1/11	6	+	20101691..20103442	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34570	OsAffx.27937.1.S1_at	11/11	6	+	20105011..20111110	hypothetical protein
LOC_Os06g34570	OsAffx.27937.2.S1_s_at	11/11	6	+	20105011..20111110	hypothetical protein
LOC_Os06g34570	OsAffx.17323.1.S1_at	1/11	6	+	20105011..20111110	hypothetical protein
LOC_Os06g34580	OsAffx.22699.1.S1_x_at	1/11	6	+	20111705..20116213	retrotransposon protein, putative, unclassified
LOC_Os06g34580	OsAffx.8201.1.S1_x_at	1/11	6	+	20111705..20116213	retrotransposon protein, putative, unclassified
LOC_Os06g34590	OsAffx.31829.1.S1_at	11/11	6	+	20117370..20119153	hypothetical protein
LOC_Os06g34600	OsAffx.15923.1.S1_at	1/11	6	+	20120528..20124292	hypothetical protein
LOC_Os06g34600	OsAffx.8794.1.S1_at	1/11	6	+	20120528..20124292	hypothetical protein
LOC_Os06g34610	NA	NA	6	+	20125202..20125871	expressed protein
LOC_Os06g34620	NA	NA	6	+	20130647..20131171	Zinc finger, C3HC4 type family protein
LOC_Os06g34630	OsAffx.5005.1.S1_at	10/11	6	+	20133624..20134277	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27937.2.S1_s_at--361--433	1	Chr06:20105041..20105065 (25 bp)	CCATCTGAGGTTGACCCTGATAACA	LOC_Os06g34570
OsAffx.27937.2.S1_s_at--599--887	1	Chr06:20105046..20105070 (25 bp)	TGAGGTTGACCCTGATAACATCATC	LOC_Os06g34570
OsAffx.27937.2.S1_s_at--1036--665	1	Chr06:20105050..20105074 (25 bp)	GTTGACCCTGATAACATCATCCCAA	LOC_Os06g34570
OsAffx.27937.2.S1_s_at--957--581	1	Chr06:20105053..20105077 (25 bp)	GACCCTGATAACATCATCCCAATCA	LOC_Os06g34570
OsAffx.27937.2.S1_s_at--427--35	1	Chr06:20105060..20105084 (25 bp)	ATAACATCATCCCAATCACCCTAGA	LOC_Os06g34570
OsAffx.27937.2.S1_s_at--30--961	1	Chr06:20105066..20105090 (25 bp)	TCATCCCAATCACCCTAGATAAGCT	LOC_Os06g34570
OsAffx.27937.2.S1_s_at--1085--37	1	Chr06:20105074..20105098 (25 bp)	ATCACCCTAGATAAGCTGACACCGG	LOC_Os06g34570
OsAffx.27937.2.S1_s_at--428--181	1	Chr06:20105077..20105101 (25 bp)	ACCCTAGATAAGCTGACACCGGAGC	LOC_Os06g34570
OsAffx.27937.2.S1_s_at--112--149	1	Chr06:20105105..20105129 (25 bp)	AGCAAGAGTTTGAGCAGATGATGAA	LOC_Os06g34570
OsAffx.27937.2.S1_s_at--186--179	1	Chr06:20105167..20105191 (25 bp)	ACCCGTTCAGGAACAGTAATTCAGA	LOC_Os06g34570
OsAffx.27937.2.S1_s_at--737--545	1	Chr06:20105177..20105201 (25 bp)	GAACAGTAATTCAGAGGTACAAGCT	LOC_Os06g34570

Target Sequence

CCATCTGAGGTTGACCCTGATAACATCATCCCAATCACCCTAGATAAGCTGACACCGGAGCAAAAGCAAGAGTTTGAGCA
GATGATGAACAACTTGAAAAACCCGTTCAGGAACAGTAATTCAGAGGTACAAGCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis