Browse Element(s) Details


OsAffx.2810.1.S1_at

Description tigr:9630.m02928
TID=OsAffx.2810.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3059011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30560OsAffx.12293.1.S1_at11/112+18180503..18180790hypothetical protein
LOC_Os02g30570OsAffx.5335.1.S1_at11/112+18181629..18184765F-box protein interaction domain containing protein
LOC_Os02g30570OsAffx.24476.1.S1_at1/112+18181629..18184765F-box protein interaction domain containing protein
LOC_Os02g30580OsAffx.22947.1.S1_x_at11/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30580OsAffx.22947.2.S1_x_at6/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30580OsAffx.22947.3.S1_x_at6/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30580OsAffx.22947.5.S1_x_at1/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30590OsAffx.2810.1.S1_at11/112+18203314..18203817hypothetical protein
LOC_Os02g30600Os.5776.1.S1_at11/112+18205622..18206122expressed protein
LOC_Os02g30600Os.13482.1.S1_x_at4/112+18205622..18206122expressed protein
LOC_Os02g30610Os.57172.1.S1_at11/112+18213398..18214905expressed protein
LOC_Os02g30620Os.14990.1.S1_a_at11/112+18221542..18225610DnaJ domain containing protein, expressed
LOC_Os02g30620Os.14990.1.S1_at11/112+18221542..18225610DnaJ domain containing protein, expressed
LOC_Os02g30620Os.14990.2.S1_at11/112+18221542..18225610DnaJ domain containing protein, expressed
LOC_Os02g30624Os.12107.1.S1_a_at10/112+18225620..18229911U6 snRNA-associated Sm-like protein LSm6, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2810.1.S1_at--621--8091Chr02:18203650..18203674 (25 bp)
GGAGCCGGATGAGCAACACTGGAAT
LOC_Os02g30590
OsAffx.2810.1.S1_at--744--7991Chr02:18203644..18203668 (25 bp)
GGATGAGCAACACTGGAATCCTCGC
LOC_Os02g30590
OsAffx.2810.1.S1_at--379--8211Chr02:18203630..18203654 (25 bp)
GGAATCCTCGCCATGGAGAGGGCAG
LOC_Os02g30590
OsAffx.2810.1.S1_at--829--7611Chr02:18203606..18203630 (25 bp)
GGGAAGGTGTGACGCCAACGCTGGA
LOC_Os02g30590
OsAffx.2810.1.S1_at--68--6151Chr02:18203578..18203602 (25 bp)
GAGGTGGTCGGCAACATTGCTGGAG
LOC_Os02g30590
OsAffx.2810.1.S1_at--566--1631Chr02:18203521..18203545 (25 bp)
AGCGGTGCTCCCTTGCGATCTGTGG
LOC_Os02g30590
OsAffx.2810.1.S1_at--1148--9311Chr02:18203513..18203537 (25 bp)
TCCCTTGCGATCTGTGGCGTCGGAG
LOC_Os02g30590
OsAffx.2810.1.S1_at--759--10873Chr05:20874954..20874978 (25 bp)
TTGGCCAGTTGCTAGCATGGTTTGG
NONE
OsAffx.2810.1.S1_at--433--6671Chr02:18203377..18203401 (25 bp)
GTTGCTAGCATGGTTTGGCCAGCGA
LOC_Os02g30590
OsAffx.2810.1.S1_at--664--3711Chr02:18203373..18203397 (25 bp)
CTAGCATGGTTTGGCCAGCGAGATG
LOC_Os02g30590
OsAffx.2810.1.S1_at--695--108720Chr11:27749229..27749270 (25 bp)
TTGGCCAGCCAGTTGGAGAGGCTGT
NONE
Target Sequence 
GGAGCCGGATGAGCAACACTGGAATCCTCGCCATGGAGAGGGCAGGGAAGGTGTGACGCCAACGCTGGAGGGGAGGTGGT
CGGCAACATTGCTGGAGGGAAGGTGGCCGGCGCCCGGAGAGGGGAAGCCAGCGGTGCTCCCTTGCGATCTGTGGCGTCGG
AGGAAGAGAGCGATGGCAAGGAAGAGAGAGAAGGAAGAGGAGAGGTTGCGGGAAGGGGGAGAGGGCATGGGGCCCACAGT
TGGCCAGCGGTTGTGGCTGGCTAGATTTGGCCAGTTGCTAGCATGGTTTGGCCAGCGAGATGGCTTGGCCAGCCAGTTGG
AGAGGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2810.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis