Browse Element(s) Details


OsAffx.28142.2.S1_s_at

Description tigr:9629.m00650
TID=OsAffx.28142.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0718011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07140Os.7217.1.S1_a_at11/111+3358811..3364460Kelch motif family protein, expressed
LOC_Os01g07150Os.8693.1.S1_x_at11/111+3373395..3374007expressed protein
LOC_Os01g07150Os.55406.1.S1_x_at1/111+3373395..3374007expressed protein
LOC_Os01g07160OsAffx.22760.2.S1_at11/111+3377529..3378860F-box domain containing protein
LOC_Os01g07160OsAffx.22760.2.S1_s_at11/111+3377529..3378860F-box domain containing protein
LOC_Os01g07170Os.14483.1.S1_x_at9/111+3383709..3387558HORMA domain containing protein, expressed
LOC_Os01g07170Os.46162.1.S1_at2/111+3383709..3387558HORMA domain containing protein, expressed
LOC_Os01g07180OsAffx.28142.2.S1_s_at11/111+3388559..3389813hypothetical protein
LOC_Os01g07190OsAffx.29435.1.S1_at9/111+3392564..3393112hypothetical protein
LOC_Os01g07200Os.32568.1.S1_at11/111+3394159..3397306nuclease, putative, expressed
LOC_Os01g07212OsAffx.23145.1.S1_s_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.18398.1.S1_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212OsAffx.23145.1.S1_at10/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.20407.1.S1_at1/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07224NANA1+3409051..3410420NA
LOC_Os01g07240Os.54072.1.S1_x_at11/111+3411667..3412767expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28142.2.S1_s_at--808--9131Chr01:3389121..3389145 (25 bp)
TGCGTGCCTACTTGTCGGCGTCGAC
LOC_Os01g07180
OsAffx.28142.2.S1_s_at--535--7651Chr01:3389026..3389050 (25 bp)
GGGATCGCGAGCATCAGCACCGTGC
LOC_Os01g07180
OsAffx.28142.2.S1_s_at--158--4071Chr01:3389019..3389043 (25 bp)
CGAGCATCAGCACCGTGCTCAGGCG
LOC_Os01g07180
OsAffx.28142.2.S1_s_at--103--1931Chr01:3388971..3388995 (25 bp)
ACGGGTGGCGCCTCATTTGGGCGGA
LOC_Os01g07180
OsAffx.28142.2.S1_s_at--174--5831Chr01:3388912..3388936 (25 bp)
GACCGTGCCGACATGCAGTCGGAGA
LOC_Os01g07180
OsAffx.28142.2.S1_s_at--196--651Chr01:3388900..3388924 (25 bp)
ATGCAGTCGGAGAAGGACCTGAGAC
LOC_Os01g07180
OsAffx.28142.2.S1_s_at--537--1851Chr01:3388839..3388863 (25 bp)
ACGACATGGCCGTGTTCCACGTGTG
LOC_Os01g07180
OsAffx.28142.2.S1_s_at--484--2111Chr01:3388836..3388860 (25 bp)
ACATGGCCGTGTTCCACGTGTGCCG
LOC_Os01g07180
OsAffx.28142.2.S1_s_at--461--10691Chr01:3388688..3388712 (25 bp)
TTGCCACGCGCGCTGTGCCGTTGTT
LOC_Os01g07180
OsAffx.28142.2.S1_s_at--3--8711Chr01:3388675..3388699 (25 bp)
TGTGCCGTTGTTCGCCATTGGCCGA
LOC_Os01g07180
OsAffx.28142.2.S1_s_at--591--4231Chr01:3388671..3388695 (25 bp)
CCGTTGTTCGCCATTGGCCGAAGGG
LOC_Os01g07180
Target Sequence 
TGCGTGCCTACTTGTCGGCGTCGACGAGGACTTGGAGGAAGCCGGAGGAGGGGTGGATGAAGCTCAACTTCGACGGGTCT
TCCAAGCACTCGACCGGGATCGCGAGCATCAGCACCGTGCTCAGGCGAGGGCTCGAGCTGGCGGTGCAGAACGGGTGGCG
CCTCATTTGGGCGGAGGGCGACTCCAAGGTGATGGTCGACGTGGTGCGCGACCGTGCCGACATGCAGTCGGAGAAGGACC
TGAGACTGTGCAGGGAGATCGCCACGCTGCTCCCGCAACTCGACGACATGGCCGTGTTCCACGTGTGCCGCGGCGGGAAC
AAGGTGGCCGAGCTCGGCCACAGGGTCCCCACCTGGGTCGCCGGGGCGTCGTACGTTGCCCTGGCCGCCGTCTCCATCGT
CGTTGTGCCGCTCCCGTACCCGCAGCTCCAGCATTGCCACGCGCGCTGTGCCGTTGTTCGCCATTGGCCGAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28142.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis