Browse Element(s) Details


OsAffx.28146.1.S1_at

Description tigr:9634.m04606
TID=OsAffx.28146.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4728011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47220OsAffx.5134.1.S1_at10/116+28628473..28630394expressed protein
LOC_Os06g47220OsAffx.30891.1.S1_x_at2/116+28628473..28630394expressed protein
LOC_Os06g47230Os.12237.1.S1_a_at11/116+28638397..28640586expressed protein
LOC_Os06g47230Os.12237.2.S1_a_at11/116+28638397..28640586expressed protein
LOC_Os06g47240Os.57160.1.S1_at3/116+28641657..28641960hypothetical protein
LOC_Os06g47250OsAffx.15968.1.S1_at11/116+28643142..28647822expressed protein
LOC_Os06g47260OsAffx.15969.1.S1_at11/116+28650190..28651600Ras-related protein RHN1, putative, expressed
LOC_Os06g47270Os.50815.1.S1_at11/116+28651795..28653125Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g47280OsAffx.28146.1.S1_at11/116+28653840..28655981hypothetical protein
LOC_Os06g47290Os.24780.1.A1_a_at11/116+28657267..28661112Plant protein family protein, expressed
LOC_Os06g47300Os.27428.1.S1_at11/116+28669241..28673824RNA-binding protein, putative, expressed
LOC_Os06g47300OsAffx.13466.1.S1_at1/116+28669241..28673824RNA-binding protein, putative, expressed
LOC_Os06g47310OsAffx.28147.1.S1_at2/116+28678748..28679747uncharacterized plant-specific domain TIGR01627 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28146.1.S1_at--754--5771Chr06:28655405..28655429 (25 bp)
GACGAAGCTGAACCGCCTCCGGTTC
LOC_Os06g47280
OsAffx.28146.1.S1_at--590--9951Chr06:28655499..28655523 (25 bp)
TACCCCTACTTCTTCAGGCGGGAGC
LOC_Os06g47280
OsAffx.28146.1.S1_at--611--3811Chr06:28655523..28655547 (25 bp)
CTCCTGGAGCTTTGGTCGAGCCTGA
LOC_Os06g47280
OsAffx.28146.1.S1_at--867--1552Chr10:19284009..19284267 (25 bp)
AGCTTTGGTCGAGCCTGATCATGGC
NONE
OsAffx.28146.1.S1_at--834--551Chr06:28655616..28655640 (25 bp)
ATCCTCCGGCCGTTCGACAAGAGGC
LOC_Os06g47280
OsAffx.28146.1.S1_at--517--4031Chr06:28655626..28655650 (25 bp)
CGTTCGACAAGAGGCCGGACCGGAT
LOC_Os06g47280
OsAffx.28146.1.S1_at--208--8011Chr06:28655647..28655671 (25 bp)
GGATGGAGTACATGCGGCGCGAGCT
LOC_Os06g47280
OsAffx.28146.1.S1_at--626--3951Chr06:28655852..28655876 (25 bp)
CGGAGAGGAGTGTCCCGTTTGCTTC
LOC_Os06g47280
OsAffx.28146.1.S1_at--761--971Chr06:28655857..28655881 (25 bp)
AGGAGTGTCCCGTTTGCTTCTTCCA
LOC_Os06g47280
OsAffx.28146.1.S1_at--621--10271Chr06:28655869..28655893 (25 bp)
TTTGCTTCTTCCAGCTTGAGACCGA
LOC_Os06g47280
OsAffx.28146.1.S1_at--401--10691Chr06:28655877..28655901 (25 bp)
TTCCAGCTTGAGACCGACCTCGTCG
LOC_Os06g47280
Target Sequence 
GACGAAGCTGAACCGCCTCCGGTTCGTCGTCTCCCCCGCCGCCGGCATGGCGAGCTCGCTGGCGTGGGCCGGCTCGTCGC
TGGCGCCGCTGATCTACCCCTACTTCTTCAGGCGGGAGCTCCTGGAGCTTTGGTCGAGCCTGATCATGGCGGCGCCGGCG
AGCATCGTCCCGCCGGGAGCCACGCGCGTGGAGGTGCTCGTCGCCGTCGGCATCCTCCGGCCGTTCGACAAGAGGCCGGA
CCGGATGGAGTACATGCGGCGCGAGCTGGAGGCCGAGGCGGCGGCGGCGTGGTCGTGGCCGGGGCACCACGTCGGCCTGG
ACCTCAACCTGCCGGAGCCGGTGCTGTGCGACAGGGGCGCCACCGCCGGCGAAGTGTTGTCGGAGGAGGAGGGCGACGGG
GCGCCGCCGCCGGCGAAGAAGAGGAGGAGGGCGGTGGCTGGGGTCGCCGGAGAGGAGTGTCCCGTTTGCTTCTTCCAGCT
TGAGACCGACCTCGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28146.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis