Browse Element(s) Details


OsAffx.28155.1.S1_at

Description tigr:9634.m04634
TID=OsAffx.28155.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4756011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47530OsAffx.28152.1.S1_s_at11/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47530OsAffx.28152.1.S1_at11/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47530OsAffx.28150.1.S1_x_at1/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47540OsAffx.28153.1.S1_at10/116+28776683..28778894hypothetical protein
LOC_Os06g47544Os.55355.1.S1_x_at9/116+28786766..28787333expressed protein
LOC_Os06g47550Os.18957.1.S1_at11/116+28788033..28796547Cadmium/zinc-transporting ATPase HMA1, putative, expressed
LOC_Os06g47550OsAffx.28154.1.S1_at11/116+28788033..28796547Cadmium/zinc-transporting ATPase HMA1, putative, expressed
LOC_Os06g47560OsAffx.28155.1.S1_at11/116+28798019..28798515hypothetical protein
LOC_Os06g47570OsAffx.28156.1.S1_at11/116+28800753..28803728pentatricopeptide, putative, expressed
LOC_Os06g47580Os.52582.1.S1_at11/116+28805783..28815146ImpB/MucB/SamB family protein, expressed
LOC_Os06g47590OsAffx.5138.1.S1_at11/116+28817164..28818182AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28155.1.S1_at--1064--9151Chr06:28798445..28798469 (25 bp)
TGCGCGAGCACCTGCAGGTCAGCTG
LOC_Os06g47560
OsAffx.28155.1.S1_at--689--9051Chr06:28798433..28798457 (25 bp)
TGCAGGTCAGCTGCATCTCCATCGG
LOC_Os06g47560
OsAffx.28155.1.S1_at--230--3271Chr06:28798366..28798390 (25 bp)
CAACTTCGCCAAGCGTTTGCAGGCA
LOC_Os06g47560
OsAffx.28155.1.S1_at--385--10651Chr06:28798362..28798386 (25 bp)
TTCGCCAAGCGTTTGCAGGCAACGG
LOC_Os06g47560
OsAffx.28155.1.S1_at--451--6851Chr06:28798352..28798376 (25 bp)
GTTTGCAGGCAACGGCCATCGCCAT
LOC_Os06g47560
OsAffx.28155.1.S1_at--395--8511Chr06:28798168..28798192 (25 bp)
TGGAAGTATGCTTGGTGCTTACACC
LOC_Os06g47560
OsAffx.28155.1.S1_at--909--6911Chr06:28798163..28798187 (25 bp)
GTATGCTTGGTGCTTACACCTTCAA
LOC_Os06g47560
OsAffx.28155.1.S1_at--427--7771Chr06:28798083..28798179 (25 bp)
GGTGCTTACACCTTCAAGGGAAAAT
LOC_Os06g47560
OsAffx.28155.1.S1_at--1144--8151Chr06:28798065..28798089 (25 bp)
GGAAAATGAAGCCTCCTTTAGTACA
LOC_Os06g47560
OsAffx.28155.1.S1_at--980--5411Chr06:28798058..28798082 (25 bp)
GAAGCCTCCTTTAGTACAGAGGAAT
LOC_Os06g47560
OsAffx.28155.1.S1_at--196--3671Chr06:28798050..28798074 (25 bp)
CTTTAGTACAGAGGAATTTCATGGG
LOC_Os06g47560
Target Sequence 
TGCGCGAGCACCTGCAGGTCAGCTGCATCTCCATCGGCCTCCTCCTGGTCGCCGCCGCGTGCCCGCACATGGCGGCGCTC
AACTTCGCCAAGCGTTTGCAGGCAACGGCCATCGCCATCGCCTTGCCTCTCGTCGGGGATTGGAAGTATGCTTGGTGCTT
ACACCTTCAAGGGAAAATGAAGCCTCCTTTAGTACAGAGGAATTTCATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis