Browse Element(s) Details


OsAffx.28162.1.S1_at

Description tigr:9634.m04674
TID=OsAffx.28162.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to selenium-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4792011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47860Os.32500.1.S1_a_at11/116+28961590..28964942expressed protein
LOC_Os06g47860Os.32500.2.A1_at11/116+28961590..28964942expressed protein
LOC_Os06g47860Os.56541.1.S1_at1/116+28961590..28964942expressed protein
LOC_Os06g47870NANA6+28965760..28966626hypothetical protein
LOC_Os06g47880OsAffx.5141.1.S1_at11/116+28966976..28968112Protein kinase domain containing protein
LOC_Os06g47890OsAffx.15976.1.S1_at10/116+28968494..28973543ZEITLUPE, putative, expressed
LOC_Os06g47890Os.4661.1.S1_at10/116+28968494..28973543ZEITLUPE, putative, expressed
LOC_Os06g47890OsAffx.15976.1.S1_x_at10/116+28968494..28973543ZEITLUPE, putative, expressed
LOC_Os06g47900Os.49737.1.S1_at11/116+28976494..28979782expressed protein
LOC_Os06g47900Os.51829.1.S1_x_at11/116+28976494..28979782expressed protein
LOC_Os06g47910Os.54869.1.S1_at11/116+28980369..28982438GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g47920OsAffx.28162.1.S1_at11/116+28984905..28986851pentatricopeptide, putative
LOC_Os06g47930Os.50234.1.S1_at11/116+28987079..28989337expressed protein
LOC_Os06g47940Os.32506.1.S1_at11/116+28992798..28994024nitrogen fixation protein, putative, expressed
LOC_Os06g47950OsAffx.15977.1.S1_s_at11/116+28994482..28996359pentatricopeptide, putative, expressed
LOC_Os06g47960OsAffx.28163.1.S1_at11/116+28997830..28998483RNase H domain-containing protein, putative
LOC_Os06g47970Os.11917.1.S1_at11/116+29001191..29002543expressed protein
LOC_Os06g47980OsAffx.5142.1.S1_at11/116+29010063..29010587hypothetical protein
LOC_Os06g47980OsAffx.5142.1.S1_x_at11/116+29010063..29010587hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28162.1.S1_at--765--1551Chr06:28986260..28986284 (25 bp)
AGCTTGCCGGATTCATGGGAAGAGT
LOC_Os06g47920
OsAffx.28162.1.S1_at--143--6971Chr06:28986300..28986324 (25 bp)
GTAGCTGAACATCTTTTTAAACTCG
LOC_Os06g47920
OsAffx.28162.1.S1_at--432--10171Chr06:28986355..28986379 (25 bp)
TATCAAATATACTCGCGTCAGCTGG
LOC_Os06g47920
OsAffx.28162.1.S1_at--1015--551Chr06:28986439..28986463 (25 bp)
ATCCTGCTGTTAGCTTGTTTGAAGG
LOC_Os06g47920
OsAffx.28162.1.S1_at--154--6031Chr06:28986466..28986490 (25 bp)
GAGATGGTTTGGTCCACCAGTTCTT
LOC_Os06g47920
OsAffx.28162.1.S1_at--233--4731Chr06:28986492..28986516 (25 bp)
GCTGGTGATAATGCCCACCCAAGGA
LOC_Os06g47920
OsAffx.28162.1.S1_at--55--611Chr06:28986502..28986526 (25 bp)
ATGCCCACCCAAGGACACATGAAAT
LOC_Os06g47920
OsAffx.28162.1.S1_at--189--7891Chr06:28986570..28986594 (25 bp)
GGTTATGTACCCATTTTGAGTTCAA
LOC_Os06g47920
OsAffx.28162.1.S1_at--1038--6711Chr06:28986662..28986686 (25 bp)
GTCGTTCGGTTTGCTTACGCTTGGA
LOC_Os06g47920
OsAffx.28162.1.S1_at--887--4891Chr06:28986674..28986698 (25 bp)
GCTTACGCTTGGATCTGGATGCACA
LOC_Os06g47920
OsAffx.28162.1.S1_at--474--7971Chr06:28986721..28986745 (25 bp)
GGATCTGTGATGATTGCCATTTGTT
LOC_Os06g47920
Target Sequence 
AGCTTGCCGGATTCATGGGAAGAGTGAAATTGCTAAGGTTGTAGCTGAACATCTTTTTAAACTCGAACCAGAGAGCATAG
GAAACTATGTGTTATTATCAAATATACTCGCGTCAGCTGGAAAATGGGAAGAAGTGTCAAAGGTTAGGATATTGATGAGA
AAGCAGAGACTGAAAAAGGATCCTGCTGTTAGCTTGTTTGAAGGCAGAGATGGTTTGGTCCACCAGTTCTTTGCTGGTGA
TAATGCCCACCCAAGGACACATGAAATAAAGAAAGCATTGTTGGAGTTAGTGGCAAAGCTAAAACTTGAAGGTTATGTAC
CCATTTTGAGTTCAATTGTTTATGATGTGAACGATGAAGAGAAGGAAAGGCTGTTGATGGGTCATAGTGAGAAGCTTGCT
TTGTCGTTCGGTTTGCTTACGCTTGGATCTGGATGCACAATTAGGATCATAAAGAATCTAAGGATCTGTGATGATTGCCA
TTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis