Browse Element(s) Details

OsAffx.28184.1.S1_x_at

Description

tigr:9634.m01365
TID=OsAffx.28184.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g13710	11/11	glycosyltransferase, putative
LOC_Os06g49300	4/11	glycosyltransferase, putative
LOC_Os08g34680	3/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g13660	Os.27835.1.S1_at	11/11	6	+	7574001..7580552	Alanyl-tRNA synthetase, putative, expressed
LOC_Os06g13670	Os.50197.1.S1_at	10/11	6	+	7583781..7589606	Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os06g13680	Os.8239.1.S1_at	11/11	6	+	7590593..7592328	senescence-associated protein, putative, expressed
LOC_Os06g13690	Os.27160.1.A1_at	3/11	6	+	7594184..7594953	hypothetical protein
LOC_Os06g13690	Os.25513.1.S1_at	1/11	6	+	7594184..7594953	hypothetical protein
LOC_Os06g13700	OsAffx.31590.1.S1_at	9/11	6	+	7595394..7596215	hypothetical protein
LOC_Os06g13700	OsAffx.11302.2.S1_at	1/11	6	+	7595394..7596215	hypothetical protein
LOC_Os06g13710	OsAffx.28184.1.S1_x_at	11/11	6	+	7599957..7600523	glycosyltransferase, putative
LOC_Os06g13720	Os.54410.1.S1_at	11/11	6	+	7601365..7604690	Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os06g13730	Os.55225.1.S1_at	10/11	6	+	7606109..7606940	Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os06g13740	OsAffx.29742.5.S1_s_at	11/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13740	OsAffx.29742.1.S1_x_at	11/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13740	OsAffx.29742.2.S1_x_at	7/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13740	OsAffx.29742.3.S1_x_at	6/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13750	OsAffx.29675.3.S1_at	11/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.3.S1_x_at	11/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.2.S1_x_at	8/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.1.S1_x_at	6/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.4.S1_x_at	3/11	6	+	7618835..7622920	expressed protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.28184.1.S1_x_at--1018--287	1	Chr06:7599987..7600011 (25 bp)	AAGGGCACTTTCTGCGCCTTCTGCC	LOC_Os06g13710
OsAffx.28184.1.S1_x_at--382--943	3	Chr06:7600033..7600057 (25 bp)	TCGTGGCAATCCAGTTCTTGATGAT	LOC_Os06g13710
OsAffx.28184.1.S1_x_at--312--885	2	Chr06:7600051..7600075 (25 bp)	TGATGATTTACTCACCAACCCTTGA	LOC_Os06g13710
OsAffx.28184.1.S1_x_at--795--325	3	Chr06:7600066..7600090 (25 bp)	CAACCCTTGATCAGTACATGGTGAT	LOC_Os06g13710
OsAffx.28184.1.S1_x_at--398--885	2	Chr06:7600087..7600183 (25 bp)	TGATGCTAACCACAGATGAGTTCAT	LOC_Os06g13710
OsAffx.28184.1.S1_x_at--339--131	3	Chr06:7600172..7600196 (25 bp)	AGATGAGTTCATCCCGGAGCCTCAC	LOC_Os06g13710
OsAffx.28184.1.S1_x_at--111--915	1	Chr06:7600198..7600222 (25 bp)	TGCGATGTGACTTCAGTGACAATAA	LOC_Os06g13710
OsAffx.28184.1.S1_x_at--888--735	1	Chr06:7600213..7600237 (25 bp)	GTGACAATAAATCCGACGTGTACGA	LOC_Os06g13710
OsAffx.28184.1.S1_x_at--458--239	2	Chr06:7600329..7600353 (25 bp)	AACACGACGGGCTTGGACGCGAACG	LOC_Os06g13710
OsAffx.28184.1.S1_x_at--907--105	3	Chr06:7600359..7600383 (25 bp)	AGGTGGAAGATCCAGCCGTACACCC	LOC_Os06g13710
OsAffx.28184.1.S1_x_at--248--433	2	Chr06:7600411..7600435 (25 bp)	CCATCACGGAGGTGACGTTGCGACT	LOC_Os06g13710

Target Sequence

AAGGGCACTTTCTGCGCCTTCTGCCACCCTTCTCTGCTCCTGCTCATCGTGGCAATCCAGTTCTTGATGATTTACTCACC
AACCCTTGATCAGTACATGGTGATGCTAACCACAGATGAGTTCATCCCGGAGCCTCACCTGCGATGTGACTTCAGTGACA
ATAAATCCGACGTGTACGAGATGGAGGGCGCCATCCGCATCCTCNGCCGCGAGTTGGAGGTATTCCTGGTGGCGCCTCGC
CTCGCCTCCATCTCCGGCCGCAGCGGCGTGAACACGACGGGCTTGGACGCGAACGCGACGAGGTGGAAGATCCAGCCGTA
CACCCACAAGGGCGAGTCCCGCGTGATGCCTNCCATCACGGAGGTGACGTTGCGACT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis