Browse Element(s) Details


OsAffx.28207.1.S1_at

Description tigr:9634.m04981
TID=OsAffx.28207.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AT3g27330K1G2_3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5121011/11zinc finger family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51180OsAffx.5163.1.S1_at11/116+30956573..30964056hypothetical protein
LOC_Os06g51180OsAffx.16016.1.S1_at10/116+30956573..30964056hypothetical protein
LOC_Os06g51180Os.11300.2.S1_at1/116+30956573..30964056hypothetical protein
LOC_Os06g51190Os.56657.1.S1_at10/116+30966321..30972488expressed protein
LOC_Os06g51200OsAffx.28206.1.S1_at11/116+30976912..30980048expressed protein
LOC_Os06g51210OsAffx.28207.1.S1_at11/116+30985741..30987363zinc finger family protein, putative
LOC_Os06g51220Os.12832.1.S1_a_at11/116+30992256..30994284DNA-binding protein MNB1B, putative, expressed
LOC_Os06g51220Os.14431.1.S1_x_at1/116+30992256..30994284DNA-binding protein MNB1B, putative, expressed
LOC_Os06g51230NANA6+30996881..31002886expressed protein
LOC_Os06g51240Os.23648.1.S1_s_at11/116+31007027..31010326expressed protein
LOC_Os06g51240Os.23648.1.S2_s_at11/116+31007027..31010326expressed protein
LOC_Os06g51240OsAffx.28209.3.S1_s_at11/116+31007027..31010326expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28207.1.S1_at--1019--7511Chr06:30986781..30986805 (25 bp)
GTGGATGGCGTTCATCGACGTGGAC
LOC_Os06g51210
OsAffx.28207.1.S1_at--581--7751Chr06:30987042..30987066 (25 bp)
GGTGAACTCGGTGCACCACTTCGAG
LOC_Os06g51210
OsAffx.28207.1.S1_at--953--3971Chr06:30987050..30987074 (25 bp)
CGGTGCACCACTTCGAGCTCCGGGA
LOC_Os06g51210
OsAffx.28207.1.S1_at--260--7351Chr06:30987109..30987133 (25 bp)
GTGAACCACTACAAGTTCCAGGCGT
LOC_Os06g51210
OsAffx.28207.1.S1_at--696--891Chr06:30987128..30987152 (25 bp)
AGGCGTGGGACGAGTTCCGCCTCAA
LOC_Os06g51210
OsAffx.28207.1.S1_at--462--9511Chr06:30987167..30987191 (25 bp)
TCTCTGCCTACGTGGCAGACTGGAC
LOC_Os06g51210
OsAffx.28207.1.S1_at--803--7531Chr06:30987178..30987202 (25 bp)
GTGGCAGACTGGACCCACCGGGTCA
LOC_Os06g51210
OsAffx.28207.1.S1_at--1079--7071Chr06:30987199..30987223 (25 bp)
GTCAACCTCCAGTCAAAGGACCGGA
LOC_Os06g51210
OsAffx.28207.1.S1_at--531--9211Chr06:30987206..30987230 (25 bp)
TCCAGTCAAAGGACCGGACGCCCGG
LOC_Os06g51210
OsAffx.28207.1.S1_at--154--2831Chr06:30987271..30987295 (25 bp)
AAGTTCTGCGAGGTGAACGACACGC
LOC_Os06g51210
OsAffx.28207.1.S1_at--231--9151Chr06:30987277..30987301 (25 bp)
TGCGAGGTGAACGACACGCTGCTCC
LOC_Os06g51210
Target Sequence 
GTGGATGGCGTTCATCGACGTGGACGAGTTCATCTTCTCCCCCAACTGGGCCACCGCCGCCTCCCCATCCAGCTCCATGC
TCCGGTCGATCGTCGCCGTGAAGCCGGACGTGGGACAGGTGTCGCTCGGGTGCGTGGACTTCGGGCCGTCGGGGAGAACC
ACCCACCCGCCGGAGGGGGTGACGCAGGGGTACACGTGCCGGCGGCGAGCGGTGGAGCGGCACAAGTCGCTGCTCCGGCT
GGAGGCGGCGGAGAGGTCGCTGGTGAACTCGGTGCACCACTTCGAGCTCCGGGAGGGGAAGCGCGGCGAGTGGAATCGGC
GGGCGCGGGTGAACCACTACAAGTTCCAGGCGTGGGACGAGTTCCGCCTCAAGTTCCGCCGCCGGGTCTCTGCCTACGTG
GCAGACTGGACCCACCGGGTCAACCTCCAGTCAAAGGACCGGACGCCCGGTCTGGGCTTCGACCCGGTCCAACCGGCCGG
TTGGGCCGCCAAGTTCTGCGAGGTGAACGACACGCTGCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28207.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis