Browse Element(s) Details


OsAffx.28221.1.S1_at

Description gb:NM_194225.1
DB_XREF= gi:34915487
GEN=P0446F04.30
TID=OsAffx.28221.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) peroxidase-like protein (P0446F04.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0142011/11Peroxidase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01380OsAffx.16028.1.S1_x_at11/117+237814..239244Peroxidase 1 precursor, putative
LOC_Os07g01390Os.26886.3.S1_x_at7/117+240649..246921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g01390Os.26886.1.S1_x_at5/117+240649..246921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g01390OsAffx.16244.1.S1_x_at1/117+240649..246921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g01400OsAffx.16029.1.S1_x_at11/117+251117..252166Peroxidase 1 precursor, putative, expressed
LOC_Os07g01400OsAffx.16029.1.S1_at11/117+251117..252166Peroxidase 1 precursor, putative, expressed
LOC_Os07g01410Os.20290.1.S1_at11/117+258011..261041Peroxidase family protein, expressed
LOC_Os07g01420OsAffx.28221.1.S1_at11/117+262824..263949Peroxidase family protein
LOC_Os07g01430OsAffx.22848.4.S1_at2/117+270366..276325retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g01430OsAffx.22848.4.S1_x_at1/117+270366..276325retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g01430OsAffx.22848.3.S1_x_at1/117+270366..276325retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28221.1.S1_at--953--5991Chr07:263158..263296 (25 bp)
GAGACGCCGTCTACTTCAGCGATGG
LOC_Os07g01420
OsAffx.28221.1.S1_at--609--9891Chr07:263169..263307 (25 bp)
TACTTCAGCGATGGCCCCGAGTACG
LOC_Os07g01420
OsAffx.28221.1.S1_at--248--7231Chr07:263375..263399 (25 bp)
GTCCGACGGCAATGTCACCGTCATG
LOC_Os07g01420
OsAffx.28221.1.S1_at--200--2991Chr07:263385..263409 (25 bp)
AATGTCACCGTCATGACCCAATACT
LOC_Os07g01420
OsAffx.28221.1.S1_at--393--3511Chr07:263396..263420 (25 bp)
CATGACCCAATACTTCGCCGTCAAG
LOC_Os07g01420
OsAffx.28221.1.S1_at--1135--7071Chr07:263415..263439 (25 bp)
GTCAAGAACCTCACCATGAAGGACA
LOC_Os07g01420
OsAffx.28221.1.S1_at--181--3751Chr07:263424..263448 (25 bp)
CTCACCATGAAGGACATGGTCGTCC
LOC_Os07g01420
OsAffx.28221.1.S1_at--928--8151Chr07:263669..263693 (25 bp)
GGAACGTGGCCAGCGTGGAGCCCTT
LOC_Os07g01420
OsAffx.28221.1.S1_at--783--1631Chr07:263680..263704 (25 bp)
AGCGTGGAGCCCTTGGACGCTCTCA
LOC_Os07g01420
OsAffx.28221.1.S1_at--7--10871Chr07:263692..263716 (25 bp)
TTGGACGCTCTCACGCCGGTGAAGT
LOC_Os07g01420
OsAffx.28221.1.S1_at--1159--1931Chr07:263723..263747 (25 bp)
ACGGCTACTACAAGTCGTTGGCGGC
LOC_Os07g01420
Target Sequence 
GAGACGCCGTCTACTTCAGCGATGGCCCCGAGTACGAGGTGGAGACCGGACGGCGCGACGGCAACGTCTCCAACATGGCG
GAGGCGCTCACCAACCTGCCGCCGTCCGACGGCAATGTCACCGTCATGACCCAATACTTCGCCGTCAAGAACCTCACCAT
GAAGGACATGGTCGTCCTCTCCGCCGCTCACACCATCGGCGTGGCGCACTGCACCTCCTTCTCCAAGCGGCTGTACAACT
TCACCGGCGCCGGCGACCAGGACCCGTCGCTGGACCCGGCGTTCGCCAAGCAGCTGGCGGCGGTGTGCAAGCCGGGGAAC
GTGGCCAGCGTGGAGCCCTTGGACGCTCTCACGCCGGTGAAGTTCGACAACGGCTACTACAAGTCGTTGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28221.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis