Browse Element(s) Details


OsAffx.28274.1.S1_at

Description tigr:9635.m00420
TID=OsAffx.28274.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0488011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04820Os.52735.1.S1_at10/117+2130336..2131800Protein kinase domain containing protein
LOC_Os07g04820OsAffx.24030.1.S1_x_at3/117+2130336..2131800Protein kinase domain containing protein
LOC_Os07g04830OsAffx.16088.1.S1_x_at11/117+2133407..2134336hypothetical protein
LOC_Os07g04840Os.12627.1.S1_at11/117+2134902..2136687Oxygen-evolving enhancer protein 2, chloroplast precursor, putative, expressed
LOC_Os07g04860Os.47348.1.A1_at11/117+2139036..2142269transposon protein, putative, unclassified, expressed
LOC_Os07g04850Os.17862.1.S1_at11/117+2142463..2150099snoRNA binding domain containing protein, putative, expressed
LOC_Os07g04880OsAffx.28274.1.S1_at11/117+2154204..2155852hypothetical protein
LOC_Os07g04890OsAffx.28275.1.S1_at10/117+2157853..2158588hypothetical protein
LOC_Os07g04900OsAffx.22499.1.S1_at11/117+2160944..2165422NB-ARC domain containing protein
LOC_Os07g04910Os.27992.1.S1_at11/117+2168943..2171113Reticulon family protein, expressed
LOC_Os07g04910OsAffx.2974.1.S1_s_at1/117+2168943..2171113Reticulon family protein, expressed
LOC_Os07g04930Os.7767.1.S1_at11/117+2174869..2175940expressed protein
LOC_Os07g04940NANA7+2177972..2179438hypothetical protein
LOC_Os07g04950NANA7+2180140..2180943expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28274.1.S1_at--376--5911Chr07:2154865..2154889 (25 bp)
GAGCTTTCCTTTTGTGAAGACCCAA
LOC_Os07g04880
OsAffx.28274.1.S1_at--16--5631Chr07:2154657..2154681 (25 bp)
GACAACAGGCTATTCCAAGCGGCAA
LOC_Os07g04880
OsAffx.28274.1.S1_at--611--10411Chr07:2154596..2154620 (25 bp)
TTTTGGCGCGACAACTGGCTCCAAA
LOC_Os07g04880
OsAffx.28274.1.S1_at--813--2311Chr07:2154561..2154585 (25 bp)
AAAGGATGTTGTGCCACTCTGCTTC
LOC_Os07g04880
OsAffx.28274.1.S1_at--913--10231Chr07:2154484..2154508 (25 bp)
TTTGGCTCCAGTCCTTCAAGCAATT
LOC_Os07g04880
OsAffx.28274.1.S1_at--710--4311Chr07:2154472..2154496 (25 bp)
CCTTCAAGCAATTCACCACGGTGGA
LOC_Os07g04880
OsAffx.28274.1.S1_at--342--3151Chr07:2154405..2154429 (25 bp)
AATTCAGCTTAACCCGCAAGTGCAG
LOC_Os07g04880
OsAffx.28274.1.S1_at--555--2671Chr07:2154333..2154357 (25 bp)
AAGCGCTTATTTGGCTCAGTTTCAA
LOC_Os07g04880
OsAffx.28274.1.S1_at--569--3311Chr07:2154295..2154319 (25 bp)
CACATGACTTCATTTCCATCTGGAA
LOC_Os07g04880
OsAffx.28274.1.S1_at--351--491Chr07:2154278..2154302 (25 bp)
ATCTGGAAAGCACCTGCGGAACCGA
LOC_Os07g04880
OsAffx.28274.1.S1_at--235--4651Chr07:2154263..2154287 (25 bp)
GCGGAACCGAAGACTCGTTTCTTTG
LOC_Os07g04880
Target Sequence 
GAGCTTTCCTTTTGTGAAGACCCAAGTAACACAAACCCAGGAAGCTGGAAGAACCAAAACAGGCCCGGGGTTGGTATGGA
AATACCTTGCGATGAAACCGACAACAGGCTATTCCAAGCGGCAAACAACAATTTCTATTGGAAATAGAGCAAAAACAAGC
TTTTGGCGCGACAACTGGCTCCAAAACTCCTGCCCAAAGGATGTTGTGCCACTCTGCTTCAAGCTAGCAAAACAAAAACA
AAGAAATGTTCAGAAAGAGCTGGAAGGCAATCTTTGGCTCCAGTCCTTCAAGCAATTCACCACGGTGGAAGAAATCAACG
AATTAGTGCAACTAGGGGAGATGCTACAGCAAATTCAGCTTAACCCGCAAGTGCAGGATGACATTGCTTGGAACTGGAAT
GAGAAAGGTGTTTACACAGCAGAAAGCGCTTATTTGGCTCAGTTTCAAGGATCCTTTGTAACACATGACTTCATTTCCAT
CTGGAAAGCACCTGCGGAACCGAAGACTCGTTTCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28274.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis