Browse Element(s) Details


OsAffx.28340.2.S1_at

Description tigr:9632.m03266
TID=OsAffx.28340.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=U-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3403011/11U-box domain containing protein
LOC_Os06g254203/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34000OsAffx.26318.1.S1_at11/114+20399726..20405837digalactosyldiacylglycerol synthase 1, putative, expressed
LOC_Os04g34010Os.7467.1.S1_at11/114+20405435..20408753aluminum-activated malate transporter, putative, expressed
LOC_Os04g34020Os.47130.4.A1_x_at3/114+20419153..20419476retrotransposon protein, putative, unclassified
LOC_Os04g34030OsAffx.28340.2.S1_at11/114+20422756..20424111U-box domain containing protein
LOC_Os04g34030OsAffx.28340.1.S1_x_at1/114+20422756..20424111U-box domain containing protein
LOC_Os04g34030OsAffx.3096.1.S1_s_at1/114+20422756..20424111U-box domain containing protein
LOC_Os04g34040OsAffx.3989.1.S1_at9/114+20430232..20433965hypothetical protein
LOC_Os04g34050OsAffx.3990.1.S1_at11/114+20437273..20438530VQ motif family protein, expressed
LOC_Os04g34060OsAffx.3991.1.S1_at11/114+20440192..20440698hypothetical protein
LOC_Os04g34070OsAffx.19542.3.S1_x_at7/114+20442643..20446865retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28340.2.S1_at--1076--1891Chr04:20423310..20423334 (25 bp)
ACGTCGGCGAGAGCCGCGCTGGTCG
LOC_Os04g34030
OsAffx.28340.2.S1_at--917--8471Chr04:20423081..20423105 (25 bp)
TGGCGATCGACCACATCTGCAGGCT
LOC_Os04g34030
OsAffx.28340.2.S1_at--486--4051Chr04:20423078..20423102 (25 bp)
CGATCGACCACATCTGCAGGCTGCG
LOC_Os04g34030
OsAffx.28340.2.S1_at--1014--511Chr04:20423076..20423100 (25 bp)
ATCGACCACATCTGCAGGCTGCGCG
LOC_Os04g34030
OsAffx.28340.2.S1_at--933--7571Chr04:20423018..20423042 (25 bp)
GGGCTCAGCGCCAGGTGGCGTGCAG
LOC_Os04g34030
OsAffx.28340.2.S1_at--607--1072Chr06:14878598..14878622 (25 bp)
AGGGAGATGCTCAAGATGCACGCCA
LOC_Os06g25420
OsAffx.28340.2.S1_at--1121--8032Chr06:14878600..14878622 (23 bp)
GGAGATGCTCAAGATGCACGCCAGG
LOC_Os06g25420
OsAffx.28340.2.S1_at--368--1292Chr06:14878602..14878622 (21 bp)
AGATGCTCAAGATGCACGCCAGGGT
LOC_Os06g25420
OsAffx.28340.2.S1_at--687--631Chr04:20422809..20422833 (25 bp)
ATGCTCAAGATGCACGCCAGGGTGT
LOC_Os04g34030
OsAffx.28340.2.S1_at--552--9091Chr04:20422808..20422832 (25 bp)
TGCTCAAGATGCACGCCAGGGTGTG
LOC_Os04g34030
OsAffx.28340.2.S1_at--7--4411Chr04:20422794..20422818 (25 bp)
GCCAGGGTGTGGAGGGACTCGCCAT
LOC_Os04g34030
Target Sequence 
ACGTCGGCGAGAGCCGCGCTGGTCGACGGCGTGGTGGGGGTGGTGGCGGACAGGCCGTCGGCGAAGGCGGTCAAGGTGGC
GCTCCACGTGCTCTGCCGGCTCTGCCCGTGGGCCCGGAACCGCGTCAAGGCGGTCGACGCCGGCGCCGTGTCGGCGCTCG
TGCGCCTCCTCCTCGACGAGGGCTGCGGCGGCGGCGGCGGCGACCGGCGCGCGTGCGAGCTCGCCGCCGTGGCGATCGAC
CACATCTGCAGGCTGCGCGGAGGGGCGCCTGGCTCTGGTGGCGCACCCGGCGGGGCTCAGCGCCAGGTGGCGTGCAGCGC
TGACCGCTGCCCGCACACGGCGGGCGCCGAGAGCGCCGTGCGCGCGCTGCACGCCGTGGCGAGGCACTCGGCGACGTCGG
CGGTGCTGCAGGAGATGCTGCCCGTCGGCGTGGTGGCGAGGCTGCTCTTCCTGGTGCAGGTCGGCGCCTCCGGCGAGCGG
ACGAGGGCGAGGGCGAGGGAGATGCTCAAGATGCACGCCAGGGTGTGGAGGGACTCGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28340.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis