Browse Element(s) Details


OsAffx.28353.1.S1_at

Description tigr:9635.m00842
TID=OsAffx.28353.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0887011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08840Os.39054.1.A1_s_at11/117+4572556..4574534Thioredoxin H-type 2, putative, expressed
LOC_Os07g08840Os.11037.1.S1_a_at11/117+4572556..4574534Thioredoxin H-type 2, putative, expressed
LOC_Os07g08850OsAffx.28352.1.S1_at10/117+4583508..4588966hypothetical protein
LOC_Os07g08860OsAffx.5256.1.S1_at11/117+4591394..4593907D-mannose binding lectin family protein
LOC_Os07g08860OsAffx.15908.2.S1_x_at1/117+4591394..4593907D-mannose binding lectin family protein
LOC_Os07g08870OsAffx.28353.1.S1_at11/117+4594706..4595839hypothetical protein
LOC_Os07g08880Os.33074.1.S1_at10/117+4604998..4612898ES43, putative, expressed
LOC_Os07g08890Os.50622.1.S1_at10/117+4616966..4621054NB-ARC domain containing protein, expressed
LOC_Os07g08890OsAffx.21785.2.S1_at1/117+4616966..4621054NB-ARC domain containing protein, expressed
LOC_Os07g08890Os.53962.1.S1_at1/117+4616966..4621054NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28353.1.S1_at--1039--4572Chr07:4595777..4595801 (25 bp)
GCAGCAGCTAAACGGTAGGGCCCCT
LOC_Os07g08870
OsAffx.28353.1.S1_at--955--9612Chr07:4595751..4595775 (25 bp)
TCATGCCGTGGCCATCGCTGCAGAG
LOC_Os07g08870
OsAffx.28353.1.S1_at--154--5912Chr07:4595729..4595753 (25 bp)
GAGCTCTCTCATGCCATGGCAAAGA
LOC_Os07g08870
OsAffx.28353.1.S1_at--1147--2892Chr07:4595701..4595725 (25 bp)
AAGGATCGCCAACCGCTAGAACGGG
LOC_Os07g08870
OsAffx.28353.1.S1_at--398--10011Chr07:4595685..4595709 (25 bp)
TAGAACGGGATGTGGCCCTGGCTCT
LOC_Os07g08870
OsAffx.28353.1.S1_at--182--1372Chr07:4595624..4595648 (25 bp)
AGAGCAGCCGGATCCTCTCGGTAGC
LOC_Os07g08870
OsAffx.28353.1.S1_at--399--9992Chr07:4595603..4595627 (25 bp)
TAGCGAGCGGTCTACGGACGCTTCC
LOC_Os07g08870
OsAffx.28353.1.S1_at--505--8111Chr07:4595588..4595612 (25 bp)
GGACGCTTCCTCACCAGTAGAAGAC
LOC_Os07g08870
OsAffx.28353.1.S1_at--537--3432Chr07:4595574..4595598 (25 bp)
CAGTAGAAGACCTCGCAGGCGTGCG
LOC_Os07g08870
OsAffx.28353.1.S1_at--588--4012Chr07:4595545..4595569 (25 bp)
CGTCGACCGCGCACGAGTGAAGAGA
LOC_Os07g08870
OsAffx.28353.1.S1_at--677--10151Chr07:4595244..4595268 (25 bp)
TATAGGGTAGACTACCCACCTCCAG
LOC_Os07g08870
Target Sequence 
GCAGCAGCTAAACGGTAGGGCCCCTCTCATGCCGTGGCCATCGCTGCAGAGCTCTCTCATGCCATGGCAAAGAGGCAAGG
ATCGCCAACCGCTAGAACGGGATGTGGCCCTGGCTCTGGCGGCAGAGGGACCCGGGGACGCATGCTCGGCGACAGAGCAG
CCGGATCCTCTCGGTAGCGAGCGGTCTACGGACGCTTCCTCACCAGTAGAAGACCTCGCAGGCGTGCGAGAACGTCGACC
GCGCACGAGTGAAGAGATCAGGTGTAAGAGTGAGTTGGTGAATTATAGGGTAGACTACCCACCTCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis