Browse Element(s) Details


OsAffx.28370.2.S1_at

Description tigr:9635.m00952
TID=OsAffx.28370.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0988011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09830OsAffx.5275.1.S1_s_at11/117+5227156..5229276No apical meristem protein
LOC_Os07g09840NANA7+5231227..5232429expressed protein
LOC_Os07g09850OsAffx.16180.1.S1_at11/117+5235477..5238911hypothetical protein
LOC_Os07g09860OsAffx.5275.1.S1_s_at11/117+5242938..5244974No apical meristem protein
LOC_Os07g09860OsAffx.5275.2.S1_at11/117+5242938..5244974No apical meristem protein
LOC_Os07g09870Os.14649.1.S1_at11/117+5246639..5249371F-box domain containing protein, expressed
LOC_Os07g09870Os.36460.2.S1_x_at1/117+5246639..5249371F-box domain containing protein, expressed
LOC_Os07g09880OsAffx.28370.2.S1_at11/117+5250783..5252434expressed protein
LOC_Os07g09880OsAffx.28370.1.S1_x_at1/117+5250783..5252434expressed protein
LOC_Os07g09890Os.3294.1.S1_at11/117+5254686..5258064Hexokinase 1, putative, expressed
LOC_Os07g09900OsAffx.28371.1.S1_at11/117+5261709..5265610NB-ARC domain containing protein
LOC_Os07g09910OsAffx.16181.1.S1_at11/117+5270787..5271719stripe rust resistance protein Yr10, putative
LOC_Os07g09910OsAffx.15202.1.S1_at1/117+5270787..5271719stripe rust resistance protein Yr10, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28370.2.S1_at--929--3791Chr07:5251863..5251887 (25 bp)
CTCCTATCCGCATGGACCTGTGGTT
LOC_Os07g09880
OsAffx.28370.2.S1_at--873--8091Chr07:5251850..5251874 (25 bp)
GGACCTGTGGTTTTTGACAGATTCT
LOC_Os07g09880
OsAffx.28370.2.S1_at--425--10591Chr07:5251757..5251853 (25 bp)
TTCTGAGACTGATGATGGCAGAGTC
LOC_Os07g09880
OsAffx.28370.2.S1_at--570--8251Chr07:5251741..5251765 (25 bp)
GGCAGAGTCTATACTAGGAGTGTAA
LOC_Os07g09880
OsAffx.28370.2.S1_at--1016--5191Chr07:5251711..5251735 (25 bp)
GAATTTAGAAGTGAGGATCCAGGAA
LOC_Os07g09880
OsAffx.28370.2.S1_at--1128--6351Chr07:5251696..5251720 (25 bp)
GATCCAGGAACTGGCACTTGTGCTA
LOC_Os07g09880
OsAffx.28370.2.S1_at--1133--3711Chr07:5251674..5251698 (25 bp)
CTACTGTGTTTGAGGCTAGCCGTTC
LOC_Os07g09880
OsAffx.28370.2.S1_at--906--6191Chr07:5251663..5251687 (25 bp)
GAGGCTAGCCGTTCAAGTTACAAAC
LOC_Os07g09880
OsAffx.28370.2.S1_at--91--1631Chr07:5251657..5251681 (25 bp)
AGCCGTTCAAGTTACAAACACTTTG
LOC_Os07g09880
OsAffx.28370.2.S1_at--589--2171Chr07:5251325..5251668 (25 bp)
ACAAACACTTTGAGCGTTGTTACGG
LOC_Os07g09880
OsAffx.28370.2.S1_at--44--6991Chr07:5251104..5251243 (25 bp)
GTACCGGGCGAAGGGCTGGGATTCT
LOC_Os07g09880
Target Sequence 
CTCCTATCCGCATGGACCTGTGGTTTTTGACAGATTCTGAGACTGATGATGGCAGAGTCTATACTAGGAGTGTAAATAAG
GAATTTAGAAGTGAGGATCCAGGAACTGGCACTTGTGCTACTGTGTTTGAGGCTAGCCGTTCAAGTTACAAACACTTTGA
GCGTTGTTACGGTACAGCGGTCGGTACCGGTACCGCCAGGTACCAAAATCCTAGCCGTTGGATCTGGCCCGATCCAACGG
CTGGTAGAGTTTGGTACCGGGCGAAGGGCTGGGATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28370.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis