Browse Element(s) Details


OsAffx.28440.1.S1_at

Description tigr:9635.m01430
TID=OsAffx.28440.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1442011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14370NANA7+8202857..8205687transposon protein, putative, Mutator sub-class
LOC_Os07g14380NANA7+8206004..8207846hypothetical protein
LOC_Os07g14390Os.45212.1.S1_x_at1/117+8208578..8211873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14400NANA7+8216294..8218998hypothetical protein
LOC_Os07g14410OsAffx.442.1.S1_x_at9/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.30226.2.S1_s_at6/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.30226.4.S1_x_at5/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.442.1.S1_at4/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.30226.4.S1_at4/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.30226.2.S1_x_at4/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.30226.1.S1_x_at3/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.30226.1.S1_at1/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.24587.1.S1_x_at1/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.19052.1.S1_at1/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14420OsAffx.28440.1.S1_at11/117+8228926..8229653hypothetical protein
LOC_Os07g14430NANA7+8234912..8237094transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g14440OsAffx.16261.1.S1_at10/117+8237465..8238290hypothetical protein
LOC_Os07g14450OsAffx.28441.1.S1_at11/117+8239687..8240493hypothetical protein
LOC_Os07g14460OsAffx.28442.1.S1_at11/117+8245083..8245349hypothetical protein
LOC_Os07g14470OsAffx.20818.1.S1_at11/117+8246699..8248756hypothetical protein
LOC_Os07g14480NANA7+8249928..8250332hypothetical protein
LOC_Os07g14490OsAffx.30223.2.S1_at11/117+8254014..8256556Protein kinase domain containing protein
LOC_Os07g14490OsAffx.30223.1.S1_s_at11/117+8254014..8256556Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28440.1.S1_at--746--10812Chr07:8229103..8229127 (25 bp)
TTGTACACGCATATGTCGGCGCGGC
LOC_Os07g14420
OsAffx.28440.1.S1_at--550--3991Chr07:8229182..8229206 (25 bp)
CGTGGCATGCCACGGCCTTGTATTC
LOC_Os07g14420
OsAffx.28440.1.S1_at--382--10371Chr07:8229199..8229223 (25 bp)
TTGTATTCCTCCAGGACGTCCGGTG
LOC_Os07g14420
OsAffx.28440.1.S1_at--334--1912Chr07:8229214..8229238 (25 bp)
ACGTCCGGTGCGACGCGCGACATGA
LOC_Os07g14420
OsAffx.28440.1.S1_at--295--3411Chr07:8229304..8229328 (25 bp)
CAGCAGTGGGCTTCGTTGTCGTCAT
LOC_Os07g14420
OsAffx.28440.1.S1_at--943--832Chr07:8229342..8229366 (25 bp)
ATGGAGGAAACCGACTACGCTGCTT
LOC_Os07g14420
OsAffx.28440.1.S1_at--1032--8211Chr07:8229370..8229394 (25 bp)
GGCACAATTGCGTCGGGTCCGTCAT
LOC_Os07g14420
OsAffx.28440.1.S1_at--674--5772Chr07:8229492..8229516 (25 bp)
GACGATCTCCAGCAGGAGTTCCGGC
LOC_Os07g14420
OsAffx.28440.1.S1_at--892--8252Chr07:8229517..8229541 (25 bp)
GGCAGAAACAACTCCGGCGTGGGCT
LOC_Os07g14420
OsAffx.28440.1.S1_at--289--7211Chr07:8229581..8229605 (25 bp)
GTCGTTTGCGTGGAGGCATCGTCTC
LOC_Os07g14420
OsAffx.28440.1.S1_at--229--511Chr07:8229598..8229622 (25 bp)
ATCGTCTCGTCCTTGTTGCCGGTTC
LOC_Os07g14420
Target Sequence 
TTGTACACGCATATGTCGGCGCGGCGTTGCGACCTGCGCCGCCAGTTGGGGTCCCTGCGCTGGAGGGCCACGAGGCCGCC
GTGGCATGCCACGGCCTTGTATTCCTCCAGGACGTCCGGTGCGACGCGCGACATGAAGGGCGCCAGGCGGTGCTCCACCA
ACGACGCCGCGGCGGGCGTCGCCGGGTGGGCGAGGGAGAAGCAGCAGTGGGCTTCGTTGTCGTCATGTTTTCTTCTTCTA
TGGAGGAAACCGACTACGCTGCTTCGGGGCACAATTGCGTCGGGTCCGTCATGGCACACGCGGCGGAGGAAAGGTGGGCT
GAGGATTTCGCGGCGGAGGAGATTGGATGCCGCGGCGCACCGGACGAGTGTGCCGGCGTCCGACCGAGCGACGATCTCCA
GCAGGAGTTCCGGCGGCAGAAACAACTCCGGCGTGGGCTCCGCCGGCGGCGGCATCACGGTCACGCACGCACGTCGGCGT
CGTTTGCGTGGAGGCATCGTCTCGTCCTTGTTGCCGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28440.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis