Browse Element(s) Details


OsAffx.28510.1.S1_at

Description tigr:9635.m01876
TID=OsAffx.28510.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1860011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18530Os.26886.1.S1_x_at8/117+10963093..10966437transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18530Os.26886.3.S1_x_at6/117+10963093..10966437transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18540OsAffx.16325.1.S1_at10/117+10968766..10971196hypothetical protein
LOC_Os07g18540Os.39431.1.S1_at3/117+10968766..10971196hypothetical protein
LOC_Os07g18540Os.39431.1.S1_x_at2/117+10968766..10971196hypothetical protein
LOC_Os07g18550OsAffx.8792.1.S1_at11/117+10973694..10974107hypothetical protein
LOC_Os07g18560Os.30976.1.S1_at11/117+10977428..10979183F-box domain containing protein, expressed
LOC_Os07g18570OsAffx.16326.1.S1_at11/117+10982462..10983829hypothetical protein
LOC_Os07g18580OsAffx.22620.1.S1_x_at11/117+10987060..10987837hypothetical protein
LOC_Os07g18580OsAffx.22620.1.S1_at10/117+10987060..10987837hypothetical protein
LOC_Os07g18590Os.30587.1.S1_at4/117+10989921..10990746hypothetical protein
LOC_Os07g18600OsAffx.28510.1.S1_at11/117+10991424..10992579F-box domain containing protein
LOC_Os07g18610OsAffx.10384.1.S1_at11/117+10996348..10998022F-box domain containing protein, expressed
LOC_Os07g18610OsAffx.10384.2.S1_s_at2/117+10996348..10998022F-box domain containing protein, expressed
LOC_Os07g18610OsAffx.10384.2.S1_at1/117+10996348..10998022F-box domain containing protein, expressed
LOC_Os07g18620NANA7+10999854..11003540retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18630OsAffx.10384.2.S1_at11/117+11005588..11006335hypothetical protein
LOC_Os07g18630OsAffx.10384.2.S1_s_at11/117+11005588..11006335hypothetical protein
LOC_Os07g18630OsAffx.10384.1.S1_at1/117+11005588..11006335hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28510.1.S1_at--630--9791Chr07:10992027..10992051 (25 bp)
TACATCGGCGGCTGTGACTTCCCCG
LOC_Os07g18600
OsAffx.28510.1.S1_at--311--1391Chr07:10991888..10991912 (25 bp)
AGACCCTGGGTCTCGAGGCCAGCAG
LOC_Os07g18600
OsAffx.28510.1.S1_at--663--991Chr07:10991780..10991804 (25 bp)
AGGATGCACCATGCCTCGAGAGATT
LOC_Os07g18600
OsAffx.28510.1.S1_at--730--1251Chr07:10991760..10991784 (25 bp)
AGATTGATGTTGCTCGATCCGCACA
LOC_Os07g18600
OsAffx.28510.1.S1_at--909--6371Chr07:10991745..10991769 (25 bp)
GATCCGCACAGTGGCCCAAAGAATG
LOC_Os07g18600
OsAffx.28510.1.S1_at--1121--9631Chr07:10991720..10991744 (25 bp)
TCAGGGTGGTCAGGGCGCCTCAACT
LOC_Os07g18600
OsAffx.28510.1.S1_at--224--4551Chr07:10991706..10991730 (25 bp)
GCGCCTCAACTGAAGGTATTGGGCT
LOC_Os07g18600
OsAffx.28510.1.S1_at--229--6871Chr07:10991691..10991715 (25 bp)
GTATTGGGCTACCTGTCCGACAAAA
LOC_Os07g18600
OsAffx.28510.1.S1_at--766--4251Chr07:10991680..10991704 (25 bp)
CCTGTCCGACAAAATCACCAAACTT
LOC_Os07g18600
OsAffx.28510.1.S1_at--797--3471Chr07:10991501..10991525 (25 bp)
CAGGAAACGATGGTCGTCAGTTCGA
LOC_Os07g18600
OsAffx.28510.1.S1_at--963--1671Chr07:10991475..10991499 (25 bp)
AGCCTCGCTGCGCACAGTGAAGGTT
LOC_Os07g18600
Target Sequence 
TACATCGGCGGCTGTGACTTCCCCGCCGTCGCCCCCGCCGCCGCGCCATGTTTCCCGCGGCTGACGCGGCTCACCCTCTA
CGGCGTCGCCATCTCGGAGGACGCCCTCCACCGCGTGCTCGCCGGCTGCGCCGTGCTCGAGACCCTGGGTCTCGAGGCCA
GCAGCGGCTTCGGCGCCGTCCGGATCAACTCGCCGACGCTCCGGAGCGTCGGCTTCGCCGTCTCCGCCGAGACGGAGCTC
GTGATCGAGGATGCACCATGCCTCGAGAGATTGATGTTGCTCGATCCGCACAGTGGCCCAAAGAATGTCAGGGTGGTCAG
GGCGCCTCAACTGAAGGTATTGGGCTACCTGTCCGACAAAATCACCAAACTTGATCTTGGAACTGTAATTATTCAGGAAA
CGATGGTCGTCAGTTCGACAGCCTCGCTGCGCACAGTGAAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis