Browse Element(s) Details


OsAffx.28548.1.S1_at

Description gb:NM_188153.1
DB_XREF= gi:34903389
TID=OsAffx.28548.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (OSJNBa0077F02.1), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g213791/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21340OsAffx.12146.1.S1_at11/112+12663831..12669649ABC-2 type transporter family protein, expressed
LOC_Os02g21350OsAffx.24366.1.S1_at11/112+12680130..12680576hypothetical protein
LOC_Os02g21359NANA2+12683271..12683920NA
LOC_Os02g21370OsAffx.24367.1.S1_at11/112+12685120..12685344hypothetical protein
LOC_Os02g21379OsAffx.27819.1.S1_x_at1/112+12686872..12688845NA
LOC_Os02g21379Os.31613.1.S1_at1/112+12686872..12688845NA
LOC_Os02g21379OsAffx.28548.1.S1_at1/112+12686872..12688845NA
LOC_Os02g21390NANA2+12693440..12695240hypothetical protein
LOC_Os02g21400Os.46012.3.S1_x_at7/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.46012.2.S1_x_at6/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.27088.1.A1_x_at6/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.46012.3.S1_at4/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400OsAffx.30217.1.S1_x_at2/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.45902.1.A1_x_at1/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21410OsAffx.12147.1.S1_at11/112+12712137..12714191hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28548.1.S1_at--1119--3431NONE
CAGGCGGCTAAGGAAACCGAGCTAA
NONE
OsAffx.28548.1.S1_at--52--3391NONE
TAAGGAAACCGAGCTAATTCGTTTG
NONE
OsAffx.28548.1.S1_at--990--914Chr12:11442189..11442211 (23 bp)
ATTCGTTTGGAAATCGTCGGATTCA
NONE
OsAffx.28548.1.S1_at--330--8516Chr07:12995471..12995495 (25 bp)
TGGAAATCGTCGGATTCAATGCCGA
NONE
OsAffx.28548.1.S1_at--446--6511Chr07:12995494..12995648 (25 bp)
GATTTGCCCGCCAACGCTTGTAGCG
NONE
OsAffx.28548.1.S1_at--839--6733Chr10:1269920..1269944 (25 bp)
GTTAGCTCGTGTGTCGCCGTCGTCG
NONE
OsAffx.28548.1.S1_at--649--1271Chr07:12995960..12995984 (25 bp)
AGATCGCTGGAACACCACCGTCGTC
NONE
OsAffx.28548.1.S1_at--519--4011Chr07:12996035..12996059 (25 bp)
CGTCGTTTGCCGTCATCCAAGAGCT
NONE
OsAffx.28548.1.S1_at--43--10711Chr07:12996041..12996065 (25 bp)
TTGCCGTCATCCAAGAGCTCGGTGA
NONE
OsAffx.28548.1.S1_at--797--3531Chr07:12996048..12996072 (25 bp)
CATCCAAGAGCTCGGTGAGTTCGCC
NONE
OsAffx.28548.1.S1_at--404--3551Chr07:12996118..12996142 (25 bp)
CATCGATTGCCGGCGAGCACGAGGT
NONE
Target Sequence 
CAGGCGGCTAAGGAAACCGAGCTAATTCGTTTGGAAATCGTCGGATTCAATGCCGATTTGCCCGCCAACGCTTGTAGCGC
CGCCTCCGCGTTAGCTCGTGTGTCGCCGTCGTCGCCATCATCGGAGCGCCGCCGACTCCGTCGCCCCGAAGCTCTCCACC
GCTGCCGTTGGTCCAGCCACGCCGCGCCGTTGGTCCAGCCACCACCTTCGGTCGTCGTCGCCACCGTCGGGATCGCGAGG
AGGAGCAGCACCTCGTCCACCCCTCCGTTTCCGCCGAAGATCGCTGGAACACCACCGTCGTCGTTGACCCAATCATCGCC
GCCGCTTCGACCTCGCCGCCGTCGTCATCCGTCGTCGTTTGCCGTCATCCAAGAGCTCGGTGAGTTCGCCGCGTCGCCCT
CTACCCGTTGGTGCCCTCCGTTTGCGTCGCCGCGCCATCGATTGCCGGCGAGCACGAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis