Browse Element(s) Details


OsAffx.28576.2.S1_x_at

Description gb:NM_195940.1
DB_XREF= gi:37533239
TID=OsAffx.28576.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative 40s ribosomal protein S23 (OSJNBb0023M11.9), mRNA.
PROD=putative 40s ribosomal protein S23
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2099010/11Ribosomal protein S12 containing protein
LOC_Os01g618201/11ribosomal protein S23 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20940NANA10+10270713..10272248retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20950OsAffx.248.1.S1_x_at2/1110+10273101..10273409hypothetical protein
LOC_Os10g20960OsAffx.20488.2.S1_at11/1110+10274779..10282409retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20970OsAffx.7362.1.S1_x_at1/1110+10283282..10288080transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20970Os.46314.3.S1_at1/1110+10283282..10288080transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20980OsAffx.23366.1.S1_at1/1110+10290691..10294177transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20980OsAffx.23366.2.S1_s_at1/1110+10290691..10294177transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20990OsAffx.28576.1.S1_x_at11/1110+10294530..10298861Ribosomal protein S12 containing protein
LOC_Os10g20990OsAffx.28576.3.S1_at11/1110+10294530..10298861Ribosomal protein S12 containing protein
LOC_Os10g20990OsAffx.28576.2.S1_x_at10/1110+10294530..10298861Ribosomal protein S12 containing protein
LOC_Os10g20990Os.26532.2.S1_x_at2/1110+10294530..10298861Ribosomal protein S12 containing protein
LOC_Os10g20990OsAffx.25312.1.S1_at1/1110+10294530..10298861Ribosomal protein S12 containing protein
LOC_Os10g20990Os.57454.1.S1_x_at1/1110+10294530..10298861Ribosomal protein S12 containing protein
LOC_Os10g21000Os.7485.1.S1_at11/1110+10306061..10310495nucleoside phosphatase family protein, putative, expressed
LOC_Os10g21009NANA10+10313759..10314243NA
LOC_Os10g21020OsAffx.6713.2.S1_s_at11/1110+10321963..10323633UMUC-like DNA repair family protein, putative
LOC_Os10g21020OsAffx.6713.2.S1_at10/1110+10321963..10323633UMUC-like DNA repair family protein, putative
LOC_Os10g21020OsAffx.6713.1.S1_at7/1110+10321963..10323633UMUC-like DNA repair family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28576.2.S1_x_at--766--3073Chr10:10298323..10298347 (25 bp)
CAATGAGTGGAAGAAACCCTTTGCT
LOC_Os10g20990
OsAffx.28576.2.S1_x_at--510--2611Chr10:10298309..10298333 (25 bp)
AACCCTTTGCTGGATCATCTCATGC
LOC_Os10g20990
OsAffx.28576.2.S1_x_at--49--2751Chr10:10298109..10298133 (25 bp)
AAGAAGATTGCTGCCTTTGTGCCGA
LOC_Os10g20990
OsAffx.28576.2.S1_x_at--164--9111Chr10:10298101..10298125 (25 bp)
TGCTGCCTTTGTGCCGAATGACGGT
LOC_Os10g20990
OsAffx.28576.2.S1_x_at--677--6671Chr10:10298078..10298102 (25 bp)
GTTGCTTGAACTTCATCAAGGAAAA
LOC_Os10g20990
OsAffx.28576.2.S1_x_at--223--371NONE
ATCAAGGAAAATGGGCCCGTGCCGC
NONE
OsAffx.28576.2.S1_x_at--1083--3891Chr10:10297378..10297402 (25 bp)
CTGGGACCGCTGTGCCGCCGCTTAG
LOC_Os10g20990
OsAffx.28576.2.S1_x_at--1121--9371Chr10:10297265..10297289 (25 bp)
TCGTCGCCGTCGTTTGGGAGCCCCA
LOC_Os10g20990
OsAffx.28576.2.S1_x_at--390--1831Chr10:10297220..10297244 (25 bp)
ACGCGTTCGCTTGGCGGCCATCTCG
LOC_Os10g20990
OsAffx.28576.2.S1_x_at--80--8091Chr10:10297185..10297209 (25 bp)
GGAGCGGCCGTCTCACCACCTGGGA
LOC_Os10g20990
OsAffx.28576.2.S1_x_at--414--8632Chr10:10297544..10297568 (25 bp)
TGGGACCGCCGCACGAACGCTTGCT
LOC_Os10g20990
Target Sequence 
CAATGAGTGGAAGAAACCCTTTGCTGGATCATCTCATGCCAAGGGCATTGTTTTGGAGAAGATTGGTATTGAGGCCAAGC
AGCCAAACTCTGCCATCTGTAAGTGTGCTCGTGTTCAGCTGGTGAAGAATGGGAAGAAGATTGCTGCCTTTGTGCCGAAT
GACGGTTGCTTGAACTTCATCAAGGAAAATGGGCCCGTGCCGCCGCCTGGGACAGCCGCGCCTGCGAACGACGCGCTGCC
GCCCAAGGGCCCTGCGCCGTCGCCTGGGAGCGCCACCTCGCTGCCGTCGCCTGGGACCGCTGTGCCGCCGCTTAGGACCG
CCGCGCTTGCGGCCGACGCGTCGCTGCCTGGGGACCCCGCGACGCCACCTGGGAGCCCCGTGCCGCCATCTGGGAGCGCC
GCCTCGTCGCCGTCGTTTGGGAGCCCCACGCCGTCGCCTGGGACCGCCACGCGTTCGCTTGGCGGCCATCTCGCCGCCGC
CTGGGAGCGGCCGTCTCACCACCTGGGACCGCCGCACGAACGCTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28576.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis